SMTL ID : 2ec8.1

Crystal structure of the exctracellular domain of the receptor tyrosine kinase, Kit

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

monomer

Ligands

5 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 5 residues within 4Å: Chain A: K.127, E.128, D.129, N.130, A.207 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:D.129, A:A.207 Hydrogen bonds: A:D.129 NAG.2: 3 residues within 4Å: Chain A: Y.243, Y.291, N.293 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:Y.291 Hydrogen bonds: A:N.293 NAG.3: 2 residues within 4Å: Chain A: Y.291, N.300 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.300 NAG.4: 3 residues within 4Å: Chain A: S.365, N.367, S.369 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.365, A:S.365, A:N.367, A:S.369 NAG.5: 1 residues within 4Å: Chain A: N.320 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yuzawa, S. et al., Structural Basis for Activation of the Receptor Tyrosine Kinase KIT by Stem Cell Factor. Cell(Cambridge,Mass.) (2007)

Release Date

2007-08-07

Peptides

Mast/stem cell growth factor receptor: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Mast/stem cell growth factor receptor