SMTL ID : 2eer.1

Structural study of Project ID ST2577 from Sulfolobus tokodaii strain7

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-tetramer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 6 residues within 4Å: Chain A: E.98, G.99, C.101, C.104, C.112, D.113 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:E.98, A:C.101, A:C.104, A:C.112 ZN.3: 6 residues within 4Å: Chain B: E.98, G.99, C.101, C.104, C.112, D.113 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:E.98, B:C.101, B:C.104, B:C.112 ZN.5: 6 residues within 4Å: Chain C: E.98, G.99, C.101, C.104, C.112, D.113 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:E.98, C:C.101, C:C.104, C:C.112 ZN.7: 6 residues within 4Å: Chain D: E.98, G.99, C.101, C.104, C.112, D.113 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:E.98, D:C.101, D:C.104, D:C.112

4 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.2: 29 residues within 4Å: Chain A: C.38, H.39, S.40, H.43, C.154, T.158, I.177, G.178, G.180, G.181, G.182, L.183, V.202, D.203, V.204, R.205, L.247, N.248, K.252, V.270, G.271, L.272, F.273, S.294, L.295, V.296, L.334, R.342 Chain B: T.285 23 PLIP interactions: 23 interactions with chain A Hydrophobic interactions: A:T.158, A:L.183, A:V.270 Hydrogen bonds: A:H.39, A:H.43, A:T.158, A:G.178, A:G.182, A:L.183, A:R.205, A:R.205, A:N.248, A:V.270, A:L.272, A:V.296 Water bridges: A:G.181, A:G.184, A:N.248, A:S.250, A:R.342 Salt bridges: A:H.39, A:H.39, A:R.342 NAD.4: 29 residues within 4Å: Chain A: T.285 Chain B: C.38, H.39, S.40, H.43, C.154, T.158, I.177, G.178, G.180, G.181, G.182, L.183, D.203, V.204, R.205, L.247, N.248, T.253, V.270, G.271, L.272, F.273, S.294, L.295, V.296, L.334, F.337, R.342 23 PLIP interactions: 23 interactions with chain B Hydrophobic interactions: B:T.158, B:L.183, B:V.270 Hydrogen bonds: B:H.39, B:H.43, B:T.158, B:G.182, B:L.183, B:R.205, B:R.205, B:N.248, B:V.270, B:L.272, B:V.296 Water bridges: B:G.181, B:G.184, B:N.248, B:S.250, B:R.342 Salt bridges: B:H.39, B:H.39, B:R.342 pi-Stacking: B:F.337 NAD.6: 29 residues within 4Å: Chain C: C.38, H.39, S.40, H.43, C.154, T.158, I.177, G.178, G.180, G.181, G.182, L.183, V.202, D.203, V.204, R.205, L.247, N.248, K.252, V.270, G.271, L.272, F.273, S.294, L.295, V.296, L.334, R.342 Chain D: T.285 22 PLIP interactions: 22 interactions with chain C Hydrophobic interactions: C:T.158, C:L.183, C:V.270 Hydrogen bonds: C:H.39, C:H.43, C:G.178, C:G.182, C:L.183, C:R.205, C:R.205, C:N.248, C:V.270, C:L.272, C:V.296 Water bridges: C:G.181, C:G.184, C:N.248, C:S.250, C:R.342 Salt bridges: C:H.39, C:H.39, C:R.342 NAD.8: 29 residues within 4Å: Chain C: T.285 Chain D: C.38, H.39, S.40, H.43, C.154, T.158, I.177, G.178, G.180, G.181, G.182, L.183, D.203, V.204, R.205, L.247, N.248, T.253, V.270, G.271, L.272, F.273, S.294, L.295, V.296, L.334, F.337, R.342 22 PLIP interactions: 22 interactions with chain D Hydrophobic interactions: D:T.158, D:L.183, D:V.270 Hydrogen bonds: D:H.39, D:H.43, D:G.182, D:L.183, D:R.205, D:R.205, D:N.248, D:V.270, D:L.272, D:V.296 Water bridges: D:G.181, D:G.184, D:N.248, D:S.250, D:R.342 Salt bridges: D:H.39, D:H.39, D:R.342 pi-Stacking: D:F.337

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Asada, Y. et al., Structural study of Project ID ST2577 from Sulfolobus tokodaii strain7. To be Published

Release Date

2007-08-21

Peptides

NAD-dependent alcohol dehydrogenase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

NAD-dependent alcohol dehydrogenase