SMTL ID : 2efh.1 (1 other biounit)

Ara7-GDP/AtVps9a(D185N)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

hetero-1-1-mer

Ligands

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.1: 16 residues within 4Å: Chain A: N.182, N.187 Chain B: D.20, G.22, A.23, G.24, K.25, S.26, S.27, N.125, K.126, D.128, L.129, S.155, A.156, K.157 20 PLIP interactions: 16 interactions with chain B, 4 interactions with chain A Hydrogen bonds: B:G.22, B:A.23, B:G.24, B:K.25, B:S.26, B:S.27, B:S.27, B:N.125, B:K.126, B:K.126, B:S.155, B:A.156, B:K.157, A:N.182, A:N.187 Water bridges: B:D.20, B:S.26, A:N.187, A:E.188 Salt bridges: B:D.128

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Uejima, T. et al., GDP-bound and nucleotide-free intermediates of the guanine nucleotide exchange in the Rab5/Vps9 system. J.Biol.Chem. (2010)

Release Date

2008-02-26

Peptides

Similarity to vacuolar protein sorting-associated protein VPS9: A
Small GTP-binding protein-like: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Similarity to vacuolar protein sorting-associated protein VPS9

Small GTP-binding protein-like

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