SMTL ID : 2egw.1

Crystal structure of rRNA methyltransferase with SAH ligand

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

homo-dimer

Ligands

2 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)

SAH.1: 20 residues within 4Å: Chain A: L.161, D.162, N.163, F.164, V.184, G.185, P.186, E.187, G.188, G.189, F.190, V.206, L.207, L.208, Y.211, T.212, L.213, T.215, A.218 Chain B: R.135 10 PLIP interactions: 1 interactions with chain B, 9 interactions with chain A Salt bridges: B:R.135 Hydrophobic interactions: A:T.212 Hydrogen bonds: A:L.161, A:N.163, A:G.185, A:E.187, A:F.190, A:L.208, A:L.208, A:L.213 SAH.2: 20 residues within 4Å: Chain A: R.135 Chain B: L.161, D.162, N.163, F.164, V.184, G.185, P.186, E.187, G.188, G.189, F.190, V.206, L.207, L.208, Y.211, T.212, L.213, T.215, A.218 11 PLIP interactions: 1 interactions with chain A, 10 interactions with chain B Salt bridges: A:R.135 Hydrophobic interactions: B:T.212 Hydrogen bonds: B:L.161, B:N.163, B:N.163, B:G.185, B:G.188, B:F.190, B:L.208, B:L.208, B:L.213

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dong, X. et al., Crystal structure of rRNA methyltransferase with SAH ligand. To be Published

Release Date

2007-09-04

Peptides

UPF0088 protein aq_165: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

UPF0088 protein aq_165

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