SMTL ID : 2eh9.2 (1 other biounit)

Crystal structure of the HBAF250B at-rich interaction domain (ARID)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

8 x ZN: ZINC ION(Non-covalent)

ZN.1: 7 residues within 4Å: Chain A: C.59, E.62 Chain B: C.59, E.62 Ligands: ZN.2, ZN.8, ZN.9 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B Metal complexes: A:C.59, A:E.62, B:C.59, B:E.62 ZN.2: 7 residues within 4Å: Chain A: E.62 Chain B: R.55, C.59 Ligands: ZN.1, CL.5, CL.6, ZN.8 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Metal complexes: A:E.62, B:C.59 ZN.3: 3 residues within 4Å: Chain A: E.35, E.114 Ligands: CL.7 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:E.35, A:E.114, A:E.114 ZN.4: 2 residues within 4Å: Chain A: K.23, D.27 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.27 ZN.8: 7 residues within 4Å: Chain A: C.59, E.62 Chain B: C.59, E.62 Ligands: ZN.1, ZN.2, ZN.9 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B Metal complexes: A:C.59, A:E.62, B:C.59, B:E.62 ZN.9: 7 residues within 4Å: Chain A: R.55, C.59 Chain B: E.62 Ligands: ZN.1, ZN.8, CL.12, CL.13 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Metal complexes: A:C.59, B:E.62 ZN.10: 3 residues within 4Å: Chain B: E.35, E.114 Ligands: CL.14 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:E.35, B:E.114, B:E.114 ZN.11: 2 residues within 4Å: Chain B: K.23, D.27 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:D.27

6 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 7 residues within 4Å: Chain A: R.55, V.58, E.62 Chain B: R.55, C.59 Ligands: ZN.2, CL.6 Ligand excluded by PLIP CL.6: 7 residues within 4Å: Chain A: E.62 Chain B: C.59, L.78, N.81, L.82 Ligands: ZN.2, CL.5 Ligand excluded by PLIP CL.7: 4 residues within 4Å: Chain A: T.31, E.35, E.114 Ligands: ZN.3 Ligand excluded by PLIP CL.12: 7 residues within 4Å: Chain A: R.55, C.59 Chain B: R.55, V.58, E.62 Ligands: ZN.9, CL.13 Ligand excluded by PLIP CL.13: 7 residues within 4Å: Chain A: C.59, L.78, N.81, L.82 Chain B: E.62 Ligands: ZN.9, CL.12 Ligand excluded by PLIP CL.14: 4 residues within 4Å: Chain B: T.31, E.35, E.114 Ligands: ZN.10 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shimada, A. et al., Crystal structure of the HBAF250B at-rich interaction domain (ARID). To be Published

Release Date

2008-03-11

Peptides

AT-rich interactive domain-containing protein 1B: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

AT-rich interactive domain-containing protein 1B

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