SMTL ID : 2eq8.1 (1 other biounit)

Crystal structure of lipoamide dehydrogenase from thermus thermophilus HB8 with psbdp

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.94 Å

Oligo State

hetero-oligomer

Ligands

2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 40 residues within 4Å: Chain A: I.12, G.13, T.14, G.15, P.16, G.17, V.35, E.36, A.37, E.39, G.42, V.43, C.44, V.47, G.48, C.49, T.52, K.53, G.113, F.114, A.115, A.138, T.139, G.140, S.141, S.158, V.180, R.269, R.272, L.276, G.308, D.309, L.315, L.316, A.317, H.318, A.320, Y.347 Chain B: H.440, P.441 27 PLIP interactions: 26 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:V.180 Hydrogen bonds: A:G.17, A:G.18, A:A.37, A:G.38, A:V.43, A:C.44, A:K.53, A:A.115, A:A.115, A:S.141, A:R.272, A:D.309, A:L.315, A:A.317, A:H.318, B:H.440 Water bridges: A:G.15, A:G.15, A:E.39, A:G.42, A:T.139, A:G.140, A:R.272, A:D.309, A:D.309, A:A.310 FAD.2: 42 residues within 4Å: Chain A: H.440, P.441 Chain B: I.12, G.13, T.14, G.15, P.16, G.17, G.18, V.35, E.36, A.37, G.38, E.39, G.42, V.43, C.44, V.47, G.48, C.49, T.52, K.53, G.113, F.114, A.115, A.138, T.139, G.140, S.141, S.158, V.180, R.269, R.272, L.276, G.308, D.309, L.315, L.316, A.317, H.318, A.320, Y.347 30 PLIP interactions: 27 interactions with chain B, 3 interactions with chain A Hydrophobic interactions: B:V.180 Hydrogen bonds: B:T.14, B:G.15, B:G.17, B:G.18, B:A.37, B:G.38, B:G.42, B:V.43, B:C.44, B:K.53, B:A.115, B:A.115, B:S.141, B:R.272, B:D.309, B:L.315, B:A.317, B:H.318, A:H.440 Water bridges: B:E.36, B:E.39, B:T.139, B:G.140, B:G.140, B:S.141, B:D.309, B:D.309, A:H.440, A:H.440

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nakai, T. et al., Crystal structure of lipoamide dehydrogenase from Thermus thermophilus HB8. To be Published

Release Date

2008-04-01

Peptides

Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component: AB
Pyruvate dehydrogenase complex, dihydrolipoamide acetyltransferase E2 component: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component

Pyruvate dehydrogenase complex, dihydrolipoamide acetyltransferase E2 component

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