SMTL ID : 2esa.1

GRP94 n-terminal domain bound to geldanamycin: effects of mutants 168-169 KS-AA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x GDM: GELDANAMYCIN(Non-covalent)

GDM.1: 16 residues within 4Å: Chain A: N.43, A.44, D.46, A.47, K.50, D.85, V.88, M.90, E.94, N.98, L.99, G.132, V.133, G.134, F.135, T.181 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:N.43, A:A.47, A:K.50, A:V.88, A:N.98, A:L.99, A:F.135 Hydrogen bonds: A:K.50, A:D.85, A:F.135 Water bridges: A:N.43, A:A.44, A:D.85, A:G.132, A:G.134, A:G.134, A:T.181, A:T.181

1 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.2: 6 residues within 4Å: Chain A: T.148, R.173, T.176, T.182, T.184 Ligands: PGE.3 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.173, A:R.173 Water bridges: A:T.176, A:T.176

2 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.3: 4 residues within 4Å: Chain A: K.73, H.82, T.84 Ligands: PG4.2 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.73, A:T.84, A:T.84 PGE.4: 3 residues within 4Å: Chain A: N.65, N.175, T.176 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.65, A:N.175 Water bridges: A:E.66, A:N.175, A:N.175

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Immormino, R.M. et al., Crystal Structure of GRP94 with the specific mutation KS168-169AA; with bound Geldanamycin. To be Published

Release Date

2006-10-03

Peptides

Endoplasmin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Endoplasmin