SMTL ID : 2ess.1

Crystal structure of an acyl-ACP thioesterase (NP_810988.1) from Bacteroides thetaiotaomicron VPI-5482 at 1.90 A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

2 x CA: CALCIUM ION(Non-covalent)

CA.1: 2 residues within 4Å: Chain A: D.171, H.175 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.171, A:H.175, H2O.5 CA.10: 2 residues within 4Å: Chain B: D.171, H.175 3 PLIP interactions: 2 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.171, B:H.175, H2O.11

6 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 4 residues within 4Å: Chain A: S.44, G.49, A.51, T.52 Ligand excluded by PLIP CL.3: 5 residues within 4Å: Chain A: R.64, R.151, I.152, A.205, R.242 Ligand excluded by PLIP CL.4: 7 residues within 4Å: Chain A: V.14, A.15, E.16, H.19, L.26, V.30, H.34 Ligand excluded by PLIP CL.11: 4 residues within 4Å: Chain B: S.44, G.49, A.51, T.52 Ligand excluded by PLIP CL.12: 5 residues within 4Å: Chain B: R.64, R.151, I.152, A.205, R.242 Ligand excluded by PLIP CL.13: 7 residues within 4Å: Chain B: V.14, A.15, E.16, H.19, L.26, V.30, H.34 Ligand excluded by PLIP

10 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.5: 8 residues within 4Å: Chain A: A.39, G.40, A.43, F.48, I.50, W.60, R.95, W.114 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:F.48, A:I.50, A:W.60, A:W.60, A:W.60, A:W.114, A:W.114, A:W.114 Hydrogen bonds: A:A.39, A:R.95, A:R.95 Water bridges: A:G.40, A:I.50 MPD.6: 7 residues within 4Å: Chain A: E.68, L.69, D.70, K.106, Y.109, I.146, R.200 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:E.68, A:Y.109, A:Y.109, A:I.146 Hydrogen bonds: A:R.200 Water bridges: A:D.70, A:Y.109 MPD.7: 6 residues within 4Å: Chain A: S.63, R.64, F.92, A.205, Y.206, V.207 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:F.92, A:A.205 Water bridges: A:R.64 MPD.8: 6 residues within 4Å: Chain A: L.36, N.37, I.50, W.114 Chain B: P.17, F.18 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:P.17, B:F.18 MPD.9: 4 residues within 4Å: Chain A: F.22, I.191, Q.195 Chain B: G.174 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:F.22, A:F.22, A:I.191 MPD.14: 8 residues within 4Å: Chain B: A.39, G.40, A.43, F.48, I.50, W.60, R.95, W.114 13 PLIP interactions: 13 interactions with chain B Hydrophobic interactions: B:F.48, B:I.50, B:W.60, B:W.60, B:W.60, B:W.114, B:W.114, B:W.114 Hydrogen bonds: B:A.39, B:R.95, B:R.95 Water bridges: B:G.40, B:I.50 MPD.15: 7 residues within 4Å: Chain B: E.68, L.69, D.70, K.106, Y.109, I.146, R.200 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:E.68, B:Y.109, B:Y.109, B:I.146 Hydrogen bonds: B:R.200 MPD.16: 6 residues within 4Å: Chain B: S.63, R.64, F.92, A.205, Y.206, V.207 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:F.92, B:A.205 Water bridges: B:R.64 MPD.17: 6 residues within 4Å: Chain A: P.17, F.18 Chain B: L.36, N.37, I.50, W.114 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:P.17, A:F.18 MPD.18: 4 residues within 4Å: Chain A: G.174 Chain B: F.22, I.191, Q.195 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:F.22, B:F.22, B:I.191

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of an acyl-ACP thioesterase (NP_810988.1) from Bacteroides thetaiotaomicron VPI-5482 at 1.90 A resolution. To be published

Release Date

2006-03-28

Peptides

acyl-ACP thioesterase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

acyl-ACP thioesterase