SMTL ID : 2et1.1

Oxalate oxidase in complex with substrate analogue glycolate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

homo-hexamer

Ligands

6 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 5 residues within 4Å: Chain A: H.88, H.90, E.95, H.137 Ligands: GLV.2 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.88, A:H.90, A:E.95, A:H.137, H2O.1 MN.3: 5 residues within 4Å: Chain B: H.88, H.90, E.95, H.137 Ligands: GLV.4 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.88, B:H.90, B:E.95, B:H.137, H2O.7 MN.5: 5 residues within 4Å: Chain C: H.88, H.90, E.95, H.137 Ligands: GLV.6 5 PLIP interactions: 4 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:H.88, C:H.90, C:E.95, C:H.137, H2O.14 MN.7: 5 residues within 4Å: Chain D: H.88, H.90, E.95, H.137 Ligands: GLV.8 5 PLIP interactions: 4 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:H.88, D:H.90, D:E.95, D:H.137, H2O.20 MN.9: 5 residues within 4Å: Chain E: H.88, H.90, E.95, H.137 Ligands: GLV.10 5 PLIP interactions: 4 interactions with chain E, 1 Ligand-Water interactions Metal complexes: E:H.88, E:H.90, E:E.95, E:H.137, H2O.26 MN.11: 5 residues within 4Å: Chain F: H.88, H.90, E.95, H.137 Ligands: GLV.12 5 PLIP interactions: 4 interactions with chain F, 1 Ligand-Water interactions Metal complexes: F:H.88, F:H.90, F:E.95, F:H.137, H2O.33

6 x GLV: GLYOXYLIC ACID(Non-covalent)

GLV.2: 11 residues within 4Å: Chain A: V.56, N.75, V.77, N.85, H.88, H.90, E.95, M.149, F.153, I.160 Ligands: MN.1 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.85 Salt bridges: A:H.88, A:H.90 GLV.4: 11 residues within 4Å: Chain B: V.56, N.75, V.77, N.85, H.88, H.90, E.95, M.149, F.153, I.160 Ligands: MN.3 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:N.85 Salt bridges: B:H.88, B:H.90 GLV.6: 11 residues within 4Å: Chain C: V.56, N.75, V.77, N.85, H.88, H.90, E.95, M.149, F.153, I.160 Ligands: MN.5 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:N.85 Salt bridges: C:H.88, C:H.90 GLV.8: 11 residues within 4Å: Chain D: V.56, N.75, V.77, N.85, H.88, H.90, E.95, M.149, F.153, I.160 Ligands: MN.7 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:N.85 Salt bridges: D:H.88, D:H.90 GLV.10: 11 residues within 4Å: Chain E: V.56, N.75, V.77, N.85, H.88, H.90, E.95, M.149, F.153, I.160 Ligands: MN.9 3 PLIP interactions: 3 interactions with chain E Hydrogen bonds: E:N.85 Salt bridges: E:H.88, E:H.90 GLV.12: 11 residues within 4Å: Chain F: V.56, N.75, V.77, N.85, H.88, H.90, E.95, M.149, F.153, I.160 Ligands: MN.11 3 PLIP interactions: 3 interactions with chain F Hydrogen bonds: F:N.85 Salt bridges: F:H.88, F:H.90

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Opaleye, O. et al., Structural and spectroscopic studies shed light on the mechanism of oxalate oxidase. J.Biol.Chem. (2006)

Release Date

2005-11-22

Peptides

Oxalate oxidase 1: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

Oxalate oxidase 1

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