SMTL ID : 2ete.1

Recombinant oxalate oxidase in complex with glycolate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

homo-hexamer

Ligands

6 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 2 residues within 4Å: Chain A: N.47, S.49 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.47 NAG.4: 2 residues within 4Å: Chain B: N.47, S.49 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.49, B:S.49 NAG.7: 2 residues within 4Å: Chain C: N.47, S.49 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.47 NAG.10: 2 residues within 4Å: Chain D: N.47, S.49 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:S.49, D:S.49 NAG.13: 2 residues within 4Å: Chain E: N.47, S.49 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:N.47 NAG.16: 2 residues within 4Å: Chain F: N.47, S.49 2 PLIP interactions: 2 interactions with chain F Hydrogen bonds: F:S.49, F:S.49

6 x MN: MANGANESE (II) ION(Non-covalent)

MN.2: 5 residues within 4Å: Chain A: H.88, H.90, E.95, H.137 Ligands: GLV.3 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.88, A:H.90, A:E.95, A:H.137 MN.5: 5 residues within 4Å: Chain B: H.88, H.90, E.95, H.137 Ligands: GLV.6 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:H.88, B:H.90, B:E.95, B:H.137 MN.8: 5 residues within 4Å: Chain C: H.88, H.90, E.95, H.137 Ligands: GLV.9 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:H.88, C:H.90, C:E.95, C:H.137 MN.11: 5 residues within 4Å: Chain D: H.88, H.90, E.95, H.137 Ligands: GLV.12 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:H.88, D:H.90, D:E.95, D:H.137 MN.14: 5 residues within 4Å: Chain E: H.88, H.90, E.95, H.137 Ligands: GLV.15 4 PLIP interactions: 4 interactions with chain E Metal complexes: E:H.88, E:H.90, E:E.95, E:H.137 MN.17: 5 residues within 4Å: Chain F: H.88, H.90, E.95, H.137 Ligands: GLV.18 4 PLIP interactions: 4 interactions with chain F Metal complexes: F:H.88, F:H.90, F:E.95, F:H.137

6 x GLV: GLYOXYLIC ACID(Non-covalent)

GLV.3: 11 residues within 4Å: Chain A: V.56, N.75, V.77, N.85, H.88, H.90, E.95, M.149, F.153, I.160 Ligands: MN.2 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.75, A:N.85 Salt bridges: A:H.88, A:H.90 GLV.6: 11 residues within 4Å: Chain B: V.56, N.75, V.77, N.85, H.88, H.90, E.95, M.149, F.153, I.160 Ligands: MN.5 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:N.85 Salt bridges: B:H.88, B:H.90 GLV.9: 11 residues within 4Å: Chain C: V.56, N.75, V.77, N.85, H.88, H.90, E.95, M.149, F.153, I.160 Ligands: MN.8 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:N.75, C:N.85 Salt bridges: C:H.88, C:H.90 GLV.12: 11 residues within 4Å: Chain D: V.56, N.75, V.77, N.85, H.88, H.90, E.95, M.149, F.153, I.160 Ligands: MN.11 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:N.85 Salt bridges: D:H.88, D:H.90 GLV.15: 11 residues within 4Å: Chain E: V.56, N.75, V.77, N.85, H.88, H.90, E.95, M.149, F.153, I.160 Ligands: MN.14 4 PLIP interactions: 4 interactions with chain E Hydrogen bonds: E:N.75, E:N.85 Salt bridges: E:H.88, E:H.90 GLV.18: 11 residues within 4Å: Chain F: V.56, N.75, V.77, N.85, H.88, H.90, E.95, M.149, F.153, I.160 Ligands: MN.17 3 PLIP interactions: 3 interactions with chain F Hydrogen bonds: F:N.85 Salt bridges: F:H.88, F:H.90

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Opaleye, O. et al., Structural and spectroscopic studies shed light on the mechanism of oxalate oxidase. J.Biol.Chem. (2006)

Release Date

2005-11-22

Peptides

Oxalate oxidase 1: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

E
A

F
B

Oxalate oxidase 1