SMTL ID : 2ets.2 (1 other biounit)

CRYSTAL STRUCTURE OF A BACTERIAL DOMAIN OF UNKNOWN FUNCTION FROM DUF1798 FAMILY (MW1337) FROM STAPHYLOCOCCUS AUREUS SUBSP. AUREUS AT 2.25 A RESOLUTION

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

homo-hexamer

Ligands

6 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 4 residues within 4Å: Chain A: K.62, E.87 Chain E: D.55, E.87 5 PLIP interactions: 2 interactions with chain E, 3 interactions with chain A Water bridges: E:E.87, E:E.87, A:E.87 Hydrogen bonds: A:E.87 Salt bridges: A:K.62 PO4.5: 4 residues within 4Å: Chain B: K.62, E.87 Chain D: D.55, E.87 5 PLIP interactions: 3 interactions with chain B, 2 interactions with chain D Hydrogen bonds: B:E.87 Water bridges: B:E.87, D:E.87, D:E.87 Salt bridges: B:K.62 PO4.9: 4 residues within 4Å: Chain C: K.62, E.87 Chain F: D.55, E.87 5 PLIP interactions: 3 interactions with chain C, 2 interactions with chain F Hydrogen bonds: C:E.87 Water bridges: C:E.87, F:E.87, F:E.87 Salt bridges: C:K.62 PO4.13: 4 residues within 4Å: Chain B: D.55, E.87 Chain D: K.62, E.87 4 PLIP interactions: 3 interactions with chain D, 1 interactions with chain B Hydrogen bonds: D:E.87 Water bridges: D:E.80, B:E.87 Salt bridges: D:K.62 PO4.17: 4 residues within 4Å: Chain A: D.55, E.87 Chain E: K.62, E.87 4 PLIP interactions: 3 interactions with chain E, 1 interactions with chain A Hydrogen bonds: E:E.87 Water bridges: E:E.80, A:E.87 Salt bridges: E:K.62 PO4.21: 4 residues within 4Å: Chain C: D.55, E.87 Chain F: K.62, E.87 4 PLIP interactions: 3 interactions with chain F, 1 interactions with chain C Hydrogen bonds: F:E.87 Water bridges: F:E.80, C:E.87 Salt bridges: F:K.62

18 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 3 residues within 4Å: Chain A: N.75, R.77 Ligands: CL.3 Ligand excluded by PLIP CL.3: 3 residues within 4Å: Chain A: R.77 Chain E: R.97 Ligands: CL.2 Ligand excluded by PLIP CL.4: 3 residues within 4Å: Chain A: I.21, Q.111, Q.115 Ligand excluded by PLIP CL.6: 3 residues within 4Å: Chain B: N.75, R.77 Ligands: CL.7 Ligand excluded by PLIP CL.7: 3 residues within 4Å: Chain B: R.77 Chain D: R.97 Ligands: CL.6 Ligand excluded by PLIP CL.8: 3 residues within 4Å: Chain B: I.21, Q.111, Q.115 Ligand excluded by PLIP CL.10: 3 residues within 4Å: Chain C: N.75, R.77 Ligands: CL.11 Ligand excluded by PLIP CL.11: 3 residues within 4Å: Chain C: R.77 Chain F: R.97 Ligands: CL.10 Ligand excluded by PLIP CL.12: 3 residues within 4Å: Chain C: I.21, Q.111, Q.115 Ligand excluded by PLIP CL.14: 3 residues within 4Å: Chain D: N.75, R.77 Ligands: CL.15 Ligand excluded by PLIP CL.15: 3 residues within 4Å: Chain B: R.97 Chain D: R.77 Ligands: CL.14 Ligand excluded by PLIP CL.16: 3 residues within 4Å: Chain D: I.21, Q.111, Q.115 Ligand excluded by PLIP CL.18: 3 residues within 4Å: Chain E: N.75, R.77 Ligands: CL.19 Ligand excluded by PLIP CL.19: 3 residues within 4Å: Chain A: R.97 Chain E: R.77 Ligands: CL.18 Ligand excluded by PLIP CL.20: 3 residues within 4Å: Chain E: I.21, Q.111, Q.115 Ligand excluded by PLIP CL.22: 3 residues within 4Å: Chain F: N.75, R.77 Ligands: CL.23 Ligand excluded by PLIP CL.23: 3 residues within 4Å: Chain C: R.97 Chain F: R.77 Ligands: CL.22 Ligand excluded by PLIP CL.24: 3 residues within 4Å: Chain F: I.21, Q.111, Q.115 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kozbial, P. et al., Crystal structures of MW1337R and lin2004: representatives of a novel protein family that adopt a four-helical bundle fold. Proteins (2008)

Release Date

2005-11-08

Peptides

hypothetical protein: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

hypothetical protein

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