SMTL ID : 2evm.1

crystal structure of methionine aminopeptidase in complex with 5-(2,5-dichlorophenyl)furan-2-carboxylic acid

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

2 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 6 residues within 4Å: Chain A: D.97, T.99, D.108, E.235 Ligands: MN.2, FC2.4 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.97, A:D.97, A:D.108, A:E.235, H2O.1 MN.2: 7 residues within 4Å: Chain A: D.108, H.171, T.202, E.204, E.235 Ligands: MN.1, FC2.4 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.108, A:H.171, A:E.204, A:E.235

1 x NA: SODIUM ION(Non-functional Binders)

NA.3: 4 residues within 4Å: Chain A: I.73, N.74, V.76, S.231 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.231, A:S.231

1 x FC2: 5-(2,5-DICHLOROPHENYL)-2-FUROIC ACID(Non-covalent)

FC2.4: 15 residues within 4Å: Chain A: Y.62, H.63, Y.65, C.70, H.79, D.97, D.108, H.171, F.177, H.178, E.204, W.221, E.235 Ligands: MN.1, MN.2 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:H.63, A:W.221 Salt bridges: A:H.171, A:H.178 pi-Stacking: A:Y.62 pi-Cation interactions: A:H.79

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xie, S.X. et al., Structural analysis of metalloform-selective inhibition of methionine aminopeptidase. Acta Crystallogr.,Sect.D (2006)

Release Date

2006-03-28

Peptides

Methionine aminopeptidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Methionine aminopeptidase

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