SMTL ID : 2ew5.1

Structure of Helicobacter Pylori peptide deformylase in complex with inhibitor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

1 x CO: COBALT (II) ION(Non-covalent)

CO.1: 5 residues within 4Å: Chain A: Q.50, C.95, H.137, E.138, H.141 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:C.95, A:H.137, A:H.141, H2O.5

1 x Y12: 4-{(1E)-3-OXO-3-[(2-PHENYLETHYL)AMINO]PROP-1-EN-1-YL}-1,2-PHENYLENE DIACETATE(Non-covalent)

Y12.2: 18 residues within 4Å: Chain A: S.41, E.42, G.43, I.44, G.45, Y.91, E.93, G.94, C.95, L.96, P.99, G.100, Y.102, L.130, V.133, A.134, H.137, E.138 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:I.44, A:Y.91, A:E.93, A:L.96, A:L.96, A:L.130, A:V.133, A:A.134 Hydrogen bonds: A:I.44, A:G.45, A:G.94, A:Y.102 Water bridges: A:L.96, A:L.96

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cai, J. et al., Peptide deformylase is a potential target for anti-Helicobacter pylori drugs: reverse docking, enzymatic assay, and X-ray crystallography validation. Protein Sci. (2006)

Release Date

2006-10-24

Peptides

peptide deformylase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

peptide deformylase

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