SMTL ID : 2ews.1

Crystal structure of S.aureus pantothenate kinase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

homo-dimer

Ligands

2 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)

MG.1: 1 residues within 4Å: Ligands: ANP.2 No protein-ligand interaction detected (PLIP) MG.3: 2 residues within 4Å: Chain B: K.33 Ligands: ANP.4 No protein-ligand interaction detected (PLIP)

2 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)

ANP.2: 18 residues within 4Å: Chain A: G.28, G.29, T.30, L.31, K.33, L.48, E.90, G.118, T.119, G.141, G.142, Q.145, Y.157, G.244, S.245, S.246, H.248 Ligands: MG.1 20 PLIP interactions: 20 interactions with chain A Hydrogen bonds: A:G.29, A:T.30, A:L.31, A:L.31, A:K.33, A:T.119, A:T.119, A:T.119, A:G.141, A:Q.145, A:S.245, A:S.245, A:S.246 Water bridges: A:E.90, A:N.116, A:G.120, A:S.245 Salt bridges: A:K.33 pi-Stacking: A:Y.157, A:Y.157 ANP.4: 16 residues within 4Å: Chain B: G.28, G.29, T.30, L.31, K.33, L.48, G.118, T.119, G.141, G.142, Q.145, Y.157, S.245, S.246, H.248 Ligands: MG.3 18 PLIP interactions: 18 interactions with chain B Hydrogen bonds: B:G.29, B:T.30, B:T.30, B:L.31, B:K.33, B:T.119, B:G.141, B:Q.145, B:Y.157, B:S.245, B:S.245 Water bridges: B:N.116, B:T.119, B:T.119, B:G.120 Salt bridges: B:K.33 pi-Stacking: B:Y.157, B:Y.157

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hong, B.S. et al., Prokaryotic Type II and Type III Pantothenate Kinases: The Same Monomer Fold Creates Dimers with Distinct Catalytic Properties. Structure (2006)

Release Date

2006-09-12

Peptides

Pantothenate kinase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Pantothenate kinase