SMTL ID : 2f1l.1

CRYSTAL STRUCTURE OF A PUTATIVE 16S RIBOSOMAL RNA PROCESSING PROTEIN RIMM (PA3744) FROM PSEUDOMONAS AERUGINOSA AT 2.46 A RESOLUTION

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.46 Å

Oligo State

homo-dimer

Ligands

4 x UNL: UNKNOWN LIGAND

UNL.1: 7 residues within 4Å: Chain A: D.43, W.115, D.144, Y.164 Chain B: A.142, N.143 Ligands: UNL.6 8 PLIP interactions: 7 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:D.43, A:W.115, A:D.144, A:D.144, A:D.144, A:D.144, B:N.143 Water bridges: A:D.144 UNL.2: 17 residues within 4Å: Chain A: Y.39, S.40, F.41, T.42, L.45, K.75, T.165, G.166, Q.167 Chain B: N.143, V.145, L.161, L.162, P.163, T.165 Ligands: UNL.7, GOL.9 12 PLIP interactions: 3 interactions with chain B, 9 interactions with chain A Hydrogen bonds: B:N.143, B:T.165, B:Q.167, A:S.40, A:S.40, A:T.42, A:T.165, A:T.165, A:G.166, A:Q.167, A:Q.167 Water bridges: A:F.41 UNL.6: 7 residues within 4Å: Chain A: A.142, N.143 Chain B: D.43, W.115, D.144, Y.164 Ligands: UNL.1 7 PLIP interactions: 6 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:D.43, B:W.115, B:W.115, B:D.144, B:D.144, A:N.143 Water bridges: B:D.144 UNL.7: 17 residues within 4Å: Chain A: N.143, V.145, L.161, L.162, P.163, T.165 Chain B: Y.39, S.40, F.41, T.42, L.45, K.75, T.165, G.166, Q.167 Ligands: UNL.2, GOL.4 11 PLIP interactions: 9 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:S.40, B:S.40, B:T.42, B:T.165, B:T.165, B:T.165, B:G.166, B:Q.167, B:Q.167, A:N.143, A:Q.167

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 7 residues within 4Å: Chain A: Q.64, A.65, K.82, G.83, L.84, E.89, F.93 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.83 GOL.4: 6 residues within 4Å: Chain A: W.183, D.184, F.187 Chain B: K.75, Q.167 Ligands: UNL.7 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:D.184, B:K.75, B:K.75 GOL.5: 7 residues within 4Å: Chain A: P.44, D.46, N.47, D.50, Y.113, S.171, I.172 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.46, A:N.47, A:I.172 GOL.8: 7 residues within 4Å: Chain B: Q.64, A.65, K.82, G.83, L.84, E.89, F.93 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:G.83 GOL.9: 6 residues within 4Å: Chain A: K.75, Q.167 Chain B: W.183, D.184, F.187 Ligands: UNL.2 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:K.75, A:K.75, A:D.182, B:D.184 GOL.10: 7 residues within 4Å: Chain B: P.44, D.46, N.47, D.50, Y.113, S.171, I.172 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:D.46, B:N.47, B:Y.113, B:I.172

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of 16S rRNA processing protein from Pseudomonas aeruginosa at 2.46 A resolution. To be published

Release Date

2006-02-28

Peptides

16S rRNA processing protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

16S rRNA processing protein