SMTL ID : 2f2c.1

X-ray structure of human CDK6-Vcyclinwith the inhibitor aminopurvalanol

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

hetero-1-1-mer

Ligands

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 9 residues within 4Å: Chain A: V.111 Chain B: R.60, R.144, R.168, M.174, A.175, L.176, T.177, Y.196 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:A.175, B:T.177, B:T.177 Salt bridges: B:R.60, B:R.144, B:R.168

1 x AP9: (2S)-2-({6-[(3-AMINO-5-CHLOROPHENYL)AMINO]-9-ISOPROPYL-9H-PURIN-2-YL}AMINO)-3-METHYLBUTAN-1-OL(Non-covalent)

AP9.2: 15 residues within 4Å: Chain B: I.19, G.20, V.27, A.41, V.77, F.98, E.99, H.100, V.101, D.102, Q.103, D.104, T.107, Q.149, L.152 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:V.27, B:V.77, B:F.98, B:F.98 Hydrogen bonds: B:H.100, B:V.101, B:V.101, B:D.104 Halogen bonds: B:T.107

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.3: 7 residues within 4Å: Chain B: L.65, L.68, E.69, E.72, H.73, V.77, R.78 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:H.73

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lu, H. et al., Toward understanding the structural basis of cyclin-dependent kinase 6 specific inhibition. J.Med.Chem. (2006)

Release Date

2006-06-13

Peptides

Cyclin homolog: A
Cell division protein kinase 6: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Cyclin homolog

Cell division protein kinase 6

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