SMTL ID : 2f4o.2 (1 other biounit)

The Mouse PNGase-HR23 Complex Reveals a Complete Remodulation of the Protein-Protein Interface Compared to its Yeast Orthologs

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.26 Å

Oligo State

hetero-2-2-mer

Ligands

2 x PHQ- VAL- ALA- ASP- CF0: PHQ-VAL-ALA-ASP-CF0(Non-covalent)

PHQ-VAL-ALA-ASP-CF0.1: 12 residues within 4Å: Chain A: W.78, N.111, R.128, N.130, R.142, C.143, G.144, E.145, D.169, H.170, V.171 Chain C: H.291 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:V.171 Hydrogen bonds: A:R.128, A:R.128, A:C.143, A:G.144, A:D.169, A:D.169 Salt bridges: A:R.128, A:R.142 PHQ-VAL-ALA-ASP-CF0.5: 12 residues within 4Å: Chain A: H.291 Chain C: W.78, N.111, R.128, N.130, R.142, C.143, G.144, E.145, D.169, H.170, V.171 8 PLIP interactions: 8 interactions with chain C Hydrophobic interactions: C:V.171 Hydrogen bonds: C:R.128, C:R.128, C:C.143, C:G.144, C:D.169 Salt bridges: C:R.128, C:R.142

4 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: C.84, C.87, C.117, C.120 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.84, A:C.87, A:C.117, A:C.120 ZN.3: 4 residues within 4Å: Chain A: H.291, H.292, H.294 Chain C: E.190 5 PLIP interactions: 3 interactions with chain A, 2 interactions with chain C Metal complexes: A:H.291, A:H.292, A:H.294, C:E.190, C:E.190 ZN.6: 4 residues within 4Å: Chain C: C.84, C.87, C.117, C.120 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.84, C:C.87, C:C.117, C:C.120 ZN.7: 4 residues within 4Å: Chain A: E.190 Chain C: H.291, H.292, H.294 5 PLIP interactions: 3 interactions with chain C, 2 interactions with chain A Metal complexes: C:H.291, C:H.292, C:H.294, A:E.190, A:E.190

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 5 residues within 4Å: Chain A: K.195, P.196, L.197, K.282, H.293 Ligand excluded by PLIP CL.8: 5 residues within 4Å: Chain C: K.195, P.196, L.197, K.282, H.293 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhao, G. et al., Structure of the mouse peptide N-glycanase-HR23 complex suggests co-evolution of the endoplasmic reticulum-associated degradation and DNA repair pathways. J.Biol.Chem. (2006)

Release Date

2006-03-07

Peptides

peptide N-glycanase: AC
XP-C repair complementing complex 58 kDa protein: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

B
B

D
B

peptide N-glycanase

XP-C repair complementing complex 58 kDa protein

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