SMTL ID : 2f5t.1

Crystal Structure of the sugar binding domain of the archaeal transcriptional regulator TrmB

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.45 Å

Oligo State

homo-dimer

Ligands

2 x GLC- GLC: alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose(Non-covalent)

GLC-GLC.1: 19 residues within 4Å: Chain A: Y.119, S.120, I.123, E.193, A.194, V.195, N.196, G.210, G.211, M.212, F.213, A.214, V.215, I.216, E.217 Chain B: N.80, H.81, N.96, F.99 9 PLIP interactions: 8 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:N.196, A:N.196, A:G.211, A:M.212, A:V.215, A:I.216, B:N.96 Water bridges: A:Y.119, A:N.196 GLC-GLC.3: 19 residues within 4Å: Chain A: N.80, H.81, N.96, F.99 Chain B: Y.119, S.120, I.123, E.193, A.194, V.195, N.196, G.210, G.211, M.212, F.213, A.214, V.215, I.216, E.217 9 PLIP interactions: 8 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:N.196, B:N.196, B:G.211, B:M.212, B:V.215, B:I.216, A:N.96 Water bridges: B:N.196, B:N.196

2 x IMD: IMIDAZOLE(Non-covalent)

IMD.2: 4 residues within 4Å: Chain A: L.172, E.173, V.215, E.217 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.217 IMD.4: 4 residues within 4Å: Chain B: L.172, E.173, V.215, E.217 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:E.217

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Krug, M. et al., Crystal Structure of the Sugar Binding Domain of the Archaeal Transcriptional Regulator TrmB. J.Biol.Chem. (2006)

Release Date

2006-02-21

Peptides

archaeal transcriptional regulator TrmB: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
X

B
X

archaeal transcriptional regulator TrmB