SMTL ID : 2f6x.1

Crystal Structure of (S)-3-O-Geranylgeranylglyceryl Phosphate Synthase complexed with sn-G1P and MPD

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

2 x 1GP: SN-GLYCEROL-1-PHOSPHATE(Non-covalent)

1GP.1: 12 residues within 4Å: Chain A: K.14, Y.168, E.170, S.172, G.173, G.196, G.197, G.198, I.216, V.217, G.218, N.219 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:E.170, A:G.173, A:G.198, A:G.218, A:N.219, A:N.219 Water bridges: A:G.197, A:G.197, A:I.199, A:I.199 1GP.3: 10 residues within 4Å: Chain B: K.14, Y.168, E.170, S.172, G.173, G.196, G.197, G.198, I.216, N.219 10 PLIP interactions: 10 interactions with chain B Hydrogen bonds: B:K.14, B:Y.168, B:Y.168, B:G.173, B:G.198, B:N.219, B:N.219 Water bridges: B:G.197, B:I.199, B:G.218

2 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.2: 9 residues within 4Å: Chain A: P.68, S.69, D.70, V.83, P.84, W.94, K.98, H.99, W.102 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:W.94, A:W.102 Hydrogen bonds: A:P.68 MPD.4: 9 residues within 4Å: Chain B: P.68, S.69, D.70, V.83, P.84, W.94, K.98, H.99, W.102 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:W.94, B:K.98, B:K.98, B:W.102

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Payandeh, J. et al., The crystal structure of (S)-3-O-geranylgeranylglyceryl phosphate synthase reveals an ancient fold for an ancient enzyme. J.Biol.Chem. (2006)

Release Date

2006-01-24

Peptides

(S)-3-O-Geranylgeranylglyceryl Phosphate Synthase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

(S)-3-O-Geranylgeranylglyceryl Phosphate Synthase

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