SMTL ID : 2f8a.1

Crystal structure of the selenocysteine to glycine mutant of human glutathione peroxidase 1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

homo-tetramer

Ligands

4 x MLA: MALONIC ACID(Non-covalent)

MLA.1: 6 residues within 4Å: Chain A: M.154, T.155, D.156, L.159, W.172, R.191 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:L.159, A:W.172 Hydrogen bonds: A:T.155, A:D.156 Water bridges: A:T.155, A:R.191, A:R.191, A:R.191, A:R.191, A:R.192 Salt bridges: A:R.191, A:R.191 MLA.2: 6 residues within 4Å: Chain B: M.154, T.155, D.156, L.159, W.172, R.191 13 PLIP interactions: 13 interactions with chain B Hydrophobic interactions: B:L.159, B:W.172 Hydrogen bonds: B:T.155, B:T.155, B:D.156, B:R.191 Water bridges: B:R.191, B:R.191, B:R.191, B:R.191, B:R.192, B:R.192 Salt bridges: B:R.191 MLA.3: 6 residues within 4Å: Chain C: M.154, T.155, D.156, L.159, W.172, R.191 13 PLIP interactions: 13 interactions with chain C Hydrophobic interactions: C:L.159, C:W.172 Hydrogen bonds: C:T.155, C:T.155, C:D.156 Water bridges: C:R.191, C:R.191, C:R.191, C:R.191, C:R.191, C:R.192 Salt bridges: C:R.191, C:R.191 MLA.4: 6 residues within 4Å: Chain D: M.154, T.155, D.156, L.159, W.172, R.191 12 PLIP interactions: 12 interactions with chain D Hydrophobic interactions: D:L.159, D:W.172 Hydrogen bonds: D:T.155, D:D.156, D:R.191 Water bridges: D:T.155, D:R.191, D:R.191, D:R.191, D:R.191, D:R.192 Salt bridges: D:R.191

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kavanagh, K.L. et al., Crystal structure of the selenocysteine to glycine mutant of human glutathione peroxidase 1. To be Published

Release Date

2005-12-13

Peptides

Glutathione peroxidase 1: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Glutathione peroxidase 1