SMTL ID : 2f8e.1

Foot and Mouth Disease Virus RNA-dependent RNA polymerase in complex with uridylylated VPg protein

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

hetero-1-1-mer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 3 residues within 4Å: Chain A: S.298 Chain B: Y.3 Ligands: U5P.3 1 PLIP interactions: 1 Ligand-Ligand interactions Metal complexes: U5P.3

1 x MN: MANGANESE (II) ION(Non-covalent)

MN.2: 2 residues within 4Å: Chain A: D.338 Ligands: U5P.3 1 PLIP interactions: 1 Ligand-Ligand interactions Metal complexes: U5P.3

1 x U5P: URIDINE-5'-MONOPHOSPHATE(Covalent)

U5P.3: 15 residues within 4Å: Chain A: R.179, D.245, S.304, N.307, Y.336, G.337, D.338, D.339, L.386 Chain B: Y.3, R.9, Q.10, R.11 Ligands: MG.1, MN.2 6 PLIP interactions: 5 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:Y.336, A:L.386 Hydrogen bonds: A:S.304, A:N.307, B:R.11 Salt bridges: A:R.179

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ferrer-Orta, C. et al., The structure of a protein primer-polymerase complex in the initiation of genome replication. Embo J. (2006)

Release Date

2006-03-28

Peptides

RNA-dependent RNA polymerase: A
VPg protein: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
X

B
A

RNA-dependent RNA polymerase

VPg protein

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