SMTL ID : 2f8l.1

Crystal structure of a putative class i s-adenosylmethionine-dependent methyltransferase (lmo1582) from listeria monocytogenes at 2.20 A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 1 residues within 4Å: Chain A: R.183 Ligand excluded by PLIP

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: K.129, K.130, N.131 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.130, A:N.131, A:N.131 Salt bridges: A:K.129

1 x SAM: S-ADENOSYLMETHIONINE(Non-covalent)

SAM.3: 25 residues within 4Å: Chain A: V.105, N.106, H.107, Q.108, M.109, T.110, P.137, A.138, C.139, G.140, T.141, A.142, N.143, L.144, D.166, V.167, D.168, L.171, Q.191, D.192, G.193, D.208, P.210, Y.214, F.238 16 PLIP interactions: 16 interactions with chain A Hydrogen bonds: A:H.107, A:T.110, A:C.139, A:T.141, A:A.142, A:N.143, A:L.144, A:V.167, A:D.192, A:G.193 Water bridges: A:Q.108, A:D.136, A:L.145, A:D.208 Salt bridges: A:D.208 pi-Stacking: A:F.238

5 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 10 residues within 4Å: Chain A: Y.251, H.278, E.280, E.303, K.310, P.311, P.312, W.339, F.340 Ligands: GOL.7 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.251, A:P.311 GOL.5: 2 residues within 4Å: Chain A: K.274, G.277 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.277 GOL.6: 3 residues within 4Å: Chain A: R.227, E.228, E.229 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.228, A:E.229, A:E.229 GOL.7: 5 residues within 4Å: Chain A: P.312, K.313, E.314, W.339 Ligands: GOL.4 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.313, A:E.314 Water bridges: A:P.311 GOL.8: 4 residues within 4Å: Chain A: T.288, S.322, L.323, T.324 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.288, A:L.323, A:T.324

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of (16411011) from Listeria monocytogenes LI2 at 2.20 A resolution. To be published

Release Date

2006-01-17

Peptides

hypothetical protein lmo1582: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

hypothetical protein lmo1582