SMTL ID : 2fao.1 (1 other biounit)

Crystal Structure of Pseudomonas aeruginosa LigD polymerase domain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

monomer

Ligands

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: S.21, H.22, R.25, K.35 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:S.21, A:S.21 Water bridges: A:R.25, A:R.25, A:R.25, A:R.25 Salt bridges: A:H.22, A:R.25, A:K.35 SO4.2: 3 residues within 4Å: Chain A: S.216, R.219, N.220 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.219 SO4.3: 5 residues within 4Å: Chain A: S.173, G.175, K.176, R.245, R.247 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:S.173, A:K.176 Water bridges: A:G.177, A:G.177, A:R.245, A:R.245 Salt bridges: A:R.245, A:R.247

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhu, H. et al., Atomic structure and nonhomologous end-joining function of the polymerase component of bacterial DNA ligase D. Proc.Natl.Acad.Sci.USA (2006)

Release Date

2006-05-23

Peptides

probable ATP-dependent DNA ligase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

probable ATP-dependent DNA ligase

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