SMTL ID : 2fcc.1 (1 other biounit)

Crystal Structure of T4 Pyrimidine Dimer Glycosylase (T4-Pdg) Covalently Complexed with a DNA Substrate Containing Abasic Site

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 7 residues within 4Å: Chain C: T.48, F.49, F.58, Y.103, P.105, H.106, S.109 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:F.49, C:Y.103, C:H.106, C:S.109 Salt bridges: C:H.106 SO4.2: 3 residues within 4Å: Chain C: R.116, K.120, Q.123 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:Q.123 Water bridges: C:K.120 Salt bridges: C:R.116, C:K.120

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 4 residues within 4Å: Chain C: F.65, K.68, R.69, E.72 8 PLIP interactions: 8 interactions with chain C Hydrogen bonds: C:R.69, C:E.72 Water bridges: C:L.5, C:L.5, C:T.6, C:V.8, C:K.68, C:D.102

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Golan, G. et al., Structure of T4 Pyrimidine Dimer Glycosylase in a Reduced Imine Covalent Complex with Abasic Site-containing DNA. J.Mol.Biol. (2006)

Release Date

2006-10-03

Peptides

Endonuclease V: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

C
A

Endonuclease V

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