SMTL ID : 2fcu.1 (1 other biounit)

SyrB2 with alpha-ketoglutarate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

1 x DSU: ((2R,3S,4S,5S)-3,4-DIHYDROXY-5-(HYDROXYMETHYL)-5-((2R,3S,4S,5S,6R)-3,4,5-TRIHYDROXY-6-METHOXY-TETRAHYDRO-2H-PYRAN-2-YLOXY)-TETRAHYDROFURAN-2-YL)METHYL NONANOATE(Non-covalent)

DSU.1: 12 residues within 4Å: Chain A: I.94, L.95, G.96, P.97, E.140, F.141, G.142, Q.168, N.169, W.233, T.235, F.262 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:F.141, A:F.262 Hydrogen bonds: A:E.140, A:E.140, A:G.142, A:G.142, A:T.235 Water bridges: A:R.15, A:E.140, A:Q.168, A:N.169, A:N.169, A:N.169, A:W.233

1 x AKG: 2-OXOGLUTARIC ACID(Non-covalent)

AKG.2: 13 residues within 4Å: Chain A: F.107, K.109, T.116, H.119, T.146, W.148, L.161, F.232, H.238, S.240, R.251, A.255, R.257 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:F.107, A:F.107, A:L.161 Hydrogen bonds: A:T.116, A:T.116, A:S.240 Water bridges: A:T.146 Salt bridges: A:K.109, A:H.238, A:R.251, A:R.257

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Blasiak, L.C. et al., Crystal structure of the non-haem iron halogenase SyrB2 in syringomycin biosynthesis. Nature (2006)

Release Date

2006-03-21

Peptides

syringomycin biosynthesis enzyme 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

syringomycin biosynthesis enzyme 2

Related Entries With Identical Sequence