SMTL ID : 2fde.1

Wild type HIV protease bound with GW0385

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

homo-dimer

Ligands

4 x K: POTASSIUM ION(Non-covalent)

K.1: 3 residues within 4Å: Chain A: T.13, E.66, G.69 No protein-ligand interaction detected (PLIP) K.2: 2 residues within 4Å: Chain A: I.63, L.64 No protein-ligand interaction detected (PLIP) K.4: 2 residues within 4Å: Chain B: T.13, G.69 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:T.13 K.5: 2 residues within 4Å: Chain B: I.63, L.64 No protein-ligand interaction detected (PLIP)

1 x 385: (3R,3AS,6AR)-HEXAHYDROFURO[2,3-B]FURAN-3-YL [(1S,2R)-3-[(1,3-BENZODIOXOL-5-YLSULFONYL)(ISOBUTYL)AMINO]-2-HYDROXY-1-{4-[(2-METHYL-1,3-THIAZOL-4-YL)METHOXY]BENZYL}PROPYL]CARBAMATE(Non-covalent)

385.3: 23 residues within 4Å: Chain A: D.26, G.28, D.30, D.31, V.33, I.48, G.49, G.50, I.51, F.54, I.85 Chain B: D.26, G.28, A.29, D.30, D.31, V.33, G.49, G.50, I.51, P.82, V.83, I.85 20 PLIP interactions: 9 interactions with chain A, 11 interactions with chain B Hydrophobic interactions: A:F.54, A:I.85, B:A.29, B:V.33, B:I.51, B:P.82, B:V.83, B:I.85 Hydrogen bonds: A:G.28, A:G.28, A:D.30, A:D.31, B:D.30, B:D.31, B:D.31, B:I.51 Water bridges: A:I.51, A:I.51 Salt bridges: A:D.26, B:D.26

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Miller, J.F. et al., Ultra-potent P1 modified arylsulfonamide HIV protease inhibitors: The discovery of GW0385. Bioorg.Med.Chem.Lett. (2006)

Release Date

2006-02-21

Peptides

Gag-Pol polyprotein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Gag-Pol polyprotein