SMTL ID : 2ffc.1

Crystal Structure of Plasmodium Vivax Orotidine-Monophosphate-Decarboxyl UMP Bound

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-dimer

Ligands

2 x U5P: URIDINE-5'-MONOPHOSPHATE(Non-covalent)

U5P.1: 17 residues within 4Å: Chain A: D.41, K.133, N.135, D.167, T.225, T.226, P.295, V.297, A.299, Q.300, N.322, V.323, G.324, R.325 Chain B: D.172, I.173, T.176 18 PLIP interactions: 17 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:P.295 Hydrogen bonds: A:K.133, A:N.135, A:D.167, A:T.226, A:T.226, A:Q.300, A:G.324, A:R.325, B:D.172 Water bridges: A:D.41, A:N.135, A:G.296, A:V.297, A:A.299, A:A.299, A:A.299 Salt bridges: A:R.325 U5P.2: 17 residues within 4Å: Chain A: D.172, I.173, T.176 Chain B: D.41, K.133, N.135, D.167, T.225, T.226, P.295, V.297, A.299, Q.300, N.322, V.323, G.324, R.325 18 PLIP interactions: 17 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:P.295 Hydrogen bonds: B:K.133, B:N.135, B:D.167, B:T.226, B:T.226, B:Q.300, B:G.324, B:R.325, A:D.172 Water bridges: B:D.41, B:N.135, B:G.296, B:V.297, B:A.299, B:A.299, B:A.299 Salt bridges: B:R.325

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vedadi, M. et al., Genome-scale protein expression and structural biology of Plasmodium falciparum and related Apicomplexan organisms. Mol.Biochem.Parasitol. (2007)

Release Date

2006-01-17

Peptides

orotidine 5-monophosphate decarboxylase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

orotidine 5-monophosphate decarboxylase