SMTL ID : 2fg0.1

Crystal structure of a putative gamma-d-glutamyl-l-diamino acid endopeptidase (npun_r0659) from nostoc punctiforme pcc 73102 at 1.79 A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.79 Å

Oligo State

homo-dimer

Ligands

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 7 residues within 4Å: Chain A: A.51, T.131, V.132, Q.143, A.144, A.147, W.152 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.131, A:Q.143 Water bridges: A:R.54 GOL.2: 8 residues within 4Å: Chain A: Y.197, R.208, I.213, I.215, G.220, D.221, S.224 Chain B: Q.121 6 PLIP interactions: 1 interactions with chain B, 5 interactions with chain A Hydrogen bonds: B:Q.121, A:R.208, A:D.221, A:D.221, A:S.224 Water bridges: A:Y.197 GOL.3: 7 residues within 4Å: Chain B: A.51, T.131, V.132, Q.143, A.144, A.147, W.152 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:Q.143 Water bridges: B:R.54, B:T.131, B:V.132, B:V.132

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xu, Q. et al., Structural Basis of Murein Peptide Specificity of a gamma-D-Glutamyl-L-Diamino Acid Endopeptidase. Structure (2009)

Release Date

2006-01-10

Peptides

COG0791: Cell wall-associated hydrolases (invasion-associated proteins): AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

COG0791: Cell wall-associated hydrolases (invasion-associated proteins)

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