- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-tetramer
- Ligands
- 17 x K: POTASSIUM ION(Non-covalent)
- 4 x MFN: N-[4,5,7-TRICARBOXYHEPTANOYL]-L-GAMMA-GLUTAMYL-N-{2-[4-({5-[(FORMYLAMINO)METHYL]-3-FURYL}METHOXY)PHENYL]ETHYL}-D-GLUTAMINE(Non-covalent)
MFN.5: 20 residues within 4Å:- Chain A: L.90, G.94, Q.95, M.98, T.99, Y.122, K.123, F.126, F.127
- Chain B: S.46, I.48, F.200, V.205, S.207, A.208, S.209, F.218, L.219, A.221, E.245
10 PLIP interactions:8 interactions with chain A, 2 interactions with chain B- Hydrophobic interactions: A:T.99, A:F.126, A:F.127, A:F.127, B:I.48
- Hydrogen bonds: A:Q.95, A:Y.122, A:K.123, B:S.209
- Salt bridges: A:K.123
MFN.6: 19 residues within 4Å:- Chain A: S.46, I.48, M.49, F.200, V.205, S.207, S.209, F.218, L.219, P.220, A.221
- Chain B: G.94, Q.95, M.98, T.99, K.123, L.124, F.127
- Ligands: H4Z.7
9 PLIP interactions:6 interactions with chain A, 3 interactions with chain B- Hydrophobic interactions: A:I.48, A:L.219, A:P.220, A:P.220, B:T.99, B:F.127
- Hydrogen bonds: A:S.46, A:S.209, B:Q.95
MFN.18: 17 residues within 4Å:- Chain C: L.90, G.94, Q.95, M.98, T.99, K.123, L.124, F.126, F.127
- Chain D: M.49, Y.170, F.200, V.205, S.207, A.208, S.209, E.245
10 PLIP interactions:2 interactions with chain D, 8 interactions with chain C- Hydrogen bonds: D:S.209, D:S.209, C:Q.95, C:K.123, C:F.127
- Hydrophobic interactions: C:T.99, C:K.123, C:F.126, C:F.127, C:F.127
MFN.25: 19 residues within 4Å:- Chain C: S.46, M.49, F.200, V.205, S.207, A.208, S.209, L.219, A.221, E.245
- Chain D: G.94, Q.95, M.98, T.99, K.123, L.124, F.126, F.127
- Ligands: H4Z.19
11 PLIP interactions:8 interactions with chain D, 3 interactions with chain C- Hydrophobic interactions: D:T.99, D:K.123, D:L.124, D:F.127, C:L.219
- Hydrogen bonds: D:Q.95, D:K.123, C:S.209, C:S.209
- Water bridges: D:K.123
- Salt bridges: D:K.123
- 2 x H4Z: 5-(4-{[1-(2-AMINO-5-FORMYL-7-METHYL-4-OXO-3,4,5,6,7,8-HEXAHYDROPTERIDIN-6-YL)ETHYL]AMINO}PHENYL)-5-DEOXY-1-O-{5-O-[(1,3-DICARBOXYPROPOXY)(HYDROXY)PHOSPHORYL]PENTOFURANOSYL}PENTITOL(Non-covalent)
H4Z.7: 14 residues within 4Å:- Chain A: E.14, F.16, V.47, G.166, Y.170, S.209, K.210, V.211, A.221, E.245, G.279, F.281, L.285
- Ligands: MFN.6
10 PLIP interactions:10 interactions with chain A- Hydrophobic interactions: A:F.16, A:F.16, A:V.47, A:V.211, A:A.221, A:F.281, A:L.285
- Hydrogen bonds: A:Y.170, A:Y.170
- Salt bridges: A:E.245
H4Z.19: 11 residues within 4Å:- Chain C: I.48, N.168, Y.170, S.209, K.210, V.211, A.221, E.245, G.279, F.281
- Ligands: MFN.25
5 PLIP interactions:5 interactions with chain C- Hydrophobic interactions: C:I.48, C:A.221
- Hydrogen bonds: C:Y.170, C:S.209
- Salt bridges: C:E.245
- 3 x PE4: 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL(Non-functional Binders)
PE4.8: 11 residues within 4Å:- Chain A: P.177, L.180, Q.181, E.184
- Chain B: W.32
- Chain C: P.177, L.180, Q.181, E.184
- Chain D: S.29, W.32
7 PLIP interactions:3 interactions with chain D, 1 interactions with chain A, 1 interactions with chain B, 2 interactions with chain C- Water bridges: D:S.29, D:K.31, D:K.31, B:K.31, C:A.185
- Hydrogen bonds: A:E.184, C:E.184
PE4.26: 14 residues within 4Å:- Chain C: K.31, W.32, M.34, I.35, K.38
- Chain D: M.34, K.38, G.59, Y.60, E.184, V.187, K.191, G.202
- Ligands: PE4.27
5 PLIP interactions:2 interactions with chain C, 3 interactions with chain D- Hydrophobic interactions: C:W.32, D:E.184
- Hydrogen bonds: C:K.31, D:K.38, D:K.191
PE4.27: 14 residues within 4Å:- Chain C: I.35, K.38, E.39
- Chain D: K.38, T.41, G.42, G.55, I.56, V.187, K.191, A.198, G.202
- Ligands: K.24, PE4.26
4 PLIP interactions:3 interactions with chain D, 1 interactions with chain C- Hydrogen bonds: D:K.38, D:I.56, D:A.198
- Hydrophobic interactions: C:I.35
- 1 x PE3: 3,6,9,12,15,18,21,24,27,30,33,36,39-TRIDECAOXAHENTETRACONTANE-1,41-DIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Acharya, P. et al., The structure of formylmethanofuran: tetrahydromethanopterin formyltransferase in complex with its coenzymes. J.Mol.Biol. (2006)
- Release Date
- 2006-03-07
- Peptides
- Formylmethanofuran--tetrahydromethanopterin formyltransferase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-tetramer
- Ligands
- 17 x K: POTASSIUM ION(Non-covalent)
- 4 x MFN: N-[4,5,7-TRICARBOXYHEPTANOYL]-L-GAMMA-GLUTAMYL-N-{2-[4-({5-[(FORMYLAMINO)METHYL]-3-FURYL}METHOXY)PHENYL]ETHYL}-D-GLUTAMINE(Non-covalent)
- 2 x H4Z: 5-(4-{[1-(2-AMINO-5-FORMYL-7-METHYL-4-OXO-3,4,5,6,7,8-HEXAHYDROPTERIDIN-6-YL)ETHYL]AMINO}PHENYL)-5-DEOXY-1-O-{5-O-[(1,3-DICARBOXYPROPOXY)(HYDROXY)PHOSPHORYL]PENTOFURANOSYL}PENTITOL(Non-covalent)
- 3 x PE4: 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL(Non-functional Binders)
- 1 x PE3: 3,6,9,12,15,18,21,24,27,30,33,36,39-TRIDECAOXAHENTETRACONTANE-1,41-DIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Acharya, P. et al., The structure of formylmethanofuran: tetrahydromethanopterin formyltransferase in complex with its coenzymes. J.Mol.Biol. (2006)
- Release Date
- 2006-03-07
- Peptides
- Formylmethanofuran--tetrahydromethanopterin formyltransferase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D