SMTL ID : 2fib.1

RECOMBINANT HUMAN GAMMA-FIBRINOGEN CARBOXYL TERMINAL FRAGMENT (RESIDUES 143-411) COMPLEXED TO THE PEPTIDE GLY-PRO-ARG-PRO AT PH 6.0

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.01 Å

Oligo State

monomer

Ligands

1 x GLY- PRO- ARG- PRO: GLY-PRO-ARG-PRO(Non-covalent)

GLY-PRO-ARG-PRO.1: 12 residues within 4Å: Chain A: F.153, D.155, D.159, T.163, F.180, Q.187, D.188, K.196, C.197, H.198, D.222, R.233 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:D.155, A:F.180, A:K.196 Hydrogen bonds: A:Q.187, A:C.197, A:H.198, A:D.222 Water bridges: A:D.222 Salt bridges: A:D.188, A:K.196

1 x CA: CALCIUM ION(Non-covalent)

CA.2: 5 residues within 4Å: Chain A: D.176, D.178, F.180, E.181, G.182 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.176, A:F.180, A:G.182, H2O.1, H2O.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pratt, K.P. et al., The primary fibrin polymerization pocket: three-dimensional structure of a 30-kDa C-terminal gamma chain fragment complexed with the peptide Gly-Pro-Arg-Pro. Proc.Natl.Acad.Sci.USA (1997)

Release Date

1997-10-15

Peptides

FIBRINOGEN: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

FIBRINOGEN

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