SMTL ID : 2fk6.1

Crystal Structure of RNAse Z/tRNA(Thr) complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

homo-dimer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain B: H.63, D.67, H.68, D.211, H.269 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:D.67, B:H.68, B:D.211, B:H.269 ZN.4: 5 residues within 4Å: Chain D: H.63, D.67, H.68, D.211, H.269 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:D.67, D:H.68, D:D.211, D:H.269

2 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.2: 6 residues within 4Å: Chain B: R.30, R.31, S.32, R.54, E.57, D.86 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:R.54 MES.5: 6 residues within 4Å: Chain D: R.30, R.31, S.32, R.54, E.57, D.86 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:R.54, D:D.86

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 2 residues within 4Å: Chain B: R.223, D.224 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.148, B:D.224 GOL.6: 2 residues within 4Å: Chain D: R.223, D.224 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:R.148

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li de la Sierra-Gallay, I. et al., Structure of the ubiquitous 3' processing enzyme RNase Z bound to transfer RNA. Nat.Struct.Mol.Biol. (2006)

Release Date

2006-03-21

Peptides

RIBONUCLEASE Z: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

B
A

D
A

RIBONUCLEASE Z