SMTL ID : 2fkb.3 (2 other biounits)

Crystal structure of a putative enzyme (possible Nudix hydrolase) from Escherichia Coli K12

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 6 residues within 4Å: Chain A: H.45, D.46, G.47, M.48, G.49, W.164 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.46, A:G.47, A:G.47, A:G.49 Salt bridges: A:H.45 SO4.2: 4 residues within 4Å: Chain A: L.82, R.86, P.99, F.100 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:F.100 Salt bridges: A:R.86

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.3: 2 residues within 4Å: Chain A: F.128, W.140 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:W.140

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 7 residues within 4Å: Chain A: H.45, A.101, H.103, S.121, C.122, W.164, N.168 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.121, A:S.121 Water bridges: A:P.99, A:V.123 GOL.5: 4 residues within 4Å: Chain A: N.19, E.20, V.21, R.38 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.19, A:V.21, A:R.38, A:R.38 GOL.6: 8 residues within 4Å: Chain A: R.27, R.31, R.56, K.60, F.62, G.73, V.74, E.88 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.27, A:R.31, A:R.56, A:R.56, A:V.74, A:E.88 GOL.7: 4 residues within 4Å: Chain A: N.16, E.17, I.22, R.36 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.36, A:R.36 Water bridges: A:E.17, A:E.17

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nocek, B. et al., Crystal structure of a putative enzyme (possible Nudix hydrolase) from Escherichia Coli K12. To be Published

Release Date

2006-02-21

Peptides

Putative Nudix hydrolase yfcD: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Putative Nudix hydrolase yfcD

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