- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.70 Å
- Oligo State
- homo-24-mer
- Ligands
- 54 x FE2: FE (II) ION(Non-covalent)
- 39 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)
MG.4: 1 residues within 4Å:- Chain B: D.34
No protein-ligand interaction detected (PLIP)MG.5: 1 residues within 4Å:- Chain A: E.135
No protein-ligand interaction detected (PLIP)MG.6: 4 residues within 4Å:- Chain A: E.118
- Chain M: E.118
- Chain O: E.118, E.121
5 PLIP interactions:1 interactions with chain M, 2 interactions with chain O, 1 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: M:E.118, O:E.118, O:E.121, A:E.118, H2O.2
MG.11: 1 residues within 4Å:- Chain A: D.34
No protein-ligand interaction detected (PLIP)MG.12: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)MG.15: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)MG.19: 1 residues within 4Å:- Chain D: E.85
2 PLIP interactions:1 interactions with chain D, 1 Ligand-Water interactions- Metal complexes: D:E.85, H2O.5
MG.20: 3 residues within 4Å:- Chain D: D.132, E.135
- Chain K: D.34
No protein-ligand interaction detected (PLIP)MG.21: 6 residues within 4Å:- Chain D: E.118, E.121
- Chain L: E.118
- Chain T: E.121
- Ligands: MG.56, MG.91
5 PLIP interactions:2 interactions with chain D, 1 interactions with chain L, 2 Ligand-Water interactions- Metal complexes: D:E.118, D:E.121, L:E.118, H2O.7, H2O.21
MG.27: 5 residues within 4Å:- Chain B: E.118
- Chain C: E.118, E.121
- Chain F: E.118, E.121
5 PLIP interactions:2 interactions with chain B, 1 interactions with chain C, 2 Ligand-Water interactions- Metal complexes: B:E.118, B:E.118, C:E.118, H2O.4, H2O.10
MG.30: 1 residues within 4Å:- Chain G: D.139
No protein-ligand interaction detected (PLIP)MG.31: 1 residues within 4Å:- Chain G: D.34
No protein-ligand interaction detected (PLIP)MG.35: 8 residues within 4Å:- Chain H: E.118, E.121
- Chain P: E.118, E.121
- Chain X: E.118, E.121
- Ligands: MG.70, MG.105
No protein-ligand interaction detected (PLIP)MG.39: 1 residues within 4Å:- Chain J: D.34
No protein-ligand interaction detected (PLIP)MG.40: 1 residues within 4Å:- Chain I: E.135
No protein-ligand interaction detected (PLIP)MG.41: 4 residues within 4Å:- Chain I: E.118
- Chain U: E.118
- Chain W: E.118, E.121
5 PLIP interactions:1 interactions with chain I, 2 interactions with chain W, 1 interactions with chain U, 1 Ligand-Water interactions- Metal complexes: I:E.118, W:E.118, W:E.121, U:E.118, H2O.17
MG.46: 1 residues within 4Å:- Chain I: D.34
No protein-ligand interaction detected (PLIP)MG.47: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)MG.50: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)MG.54: 1 residues within 4Å:- Chain L: E.85
2 PLIP interactions:1 interactions with chain L, 1 Ligand-Water interactions- Metal complexes: L:E.85, H2O.20
MG.55: 3 residues within 4Å:- Chain L: D.132, E.135
- Chain S: D.34
No protein-ligand interaction detected (PLIP)MG.56: 6 residues within 4Å:- Chain D: E.121
- Chain L: E.118, E.121
- Chain T: E.118
- Ligands: MG.21, MG.91
5 PLIP interactions:2 interactions with chain L, 1 interactions with chain T, 2 Ligand-Water interactions- Metal complexes: L:E.118, L:E.121, T:E.118, H2O.22, H2O.36
MG.62: 5 residues within 4Å:- Chain J: E.118
- Chain K: E.118, E.121
- Chain N: E.118, E.121
5 PLIP interactions:2 interactions with chain J, 1 interactions with chain K, 2 Ligand-Water interactions- Metal complexes: J:E.118, J:E.118, K:E.118, H2O.19, H2O.25
MG.65: 1 residues within 4Å:- Chain O: D.139
No protein-ligand interaction detected (PLIP)MG.66: 1 residues within 4Å:- Chain O: D.34
No protein-ligand interaction detected (PLIP)MG.70: 8 residues within 4Å:- Chain H: E.118, E.121
- Chain P: E.118, E.121
- Chain X: E.118, E.121
- Ligands: MG.35, MG.105
No protein-ligand interaction detected (PLIP)MG.74: 1 residues within 4Å:- Chain R: D.34
No protein-ligand interaction detected (PLIP)MG.75: 1 residues within 4Å:- Chain Q: E.135
No protein-ligand interaction detected (PLIP)MG.76: 4 residues within 4Å:- Chain E: E.118
- Chain G: E.118, E.121
- Chain Q: E.118
5 PLIP interactions:1 interactions with chain E, 2 interactions with chain G, 1 interactions with chain Q, 1 Ligand-Water interactions- Metal complexes: E:E.118, G:E.118, G:E.121, Q:E.118, H2O.31
MG.81: 1 residues within 4Å:- Chain Q: D.34
No protein-ligand interaction detected (PLIP)MG.82: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)MG.85: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)MG.89: 1 residues within 4Å:- Chain T: E.85
2 PLIP interactions:1 interactions with chain T, 1 Ligand-Water interactions- Metal complexes: T:E.85, H2O.35
MG.90: 3 residues within 4Å:- Chain C: D.34
- Chain T: D.132, E.135
No protein-ligand interaction detected (PLIP)MG.91: 6 residues within 4Å:- Chain D: E.118
- Chain L: E.121
- Chain T: E.118, E.121
- Ligands: MG.21, MG.56
5 PLIP interactions:2 interactions with chain T, 1 interactions with chain D, 2 Ligand-Water interactions- Metal complexes: T:E.118, T:E.121, D:E.118, H2O.6, H2O.37
MG.97: 5 residues within 4Å:- Chain R: E.118
- Chain S: E.118, E.121
- Chain V: E.118, E.121
5 PLIP interactions:1 interactions with chain S, 2 interactions with chain R, 2 Ligand-Water interactions- Metal complexes: S:E.118, R:E.118, R:E.118, H2O.34, H2O.40
MG.100: 1 residues within 4Å:- Chain W: D.139
No protein-ligand interaction detected (PLIP)MG.101: 1 residues within 4Å:- Chain W: D.34
No protein-ligand interaction detected (PLIP)MG.105: 8 residues within 4Å:- Chain H: E.118, E.121
- Chain P: E.118, E.121
- Chain X: E.118, E.121
- Ligands: MG.35, MG.70
No protein-ligand interaction detected (PLIP)- 12 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
HEM.7: 17 residues within 4Å:- Chain A: L.19, I.22, N.23, F.26, Y.45, I.49, M.52
- Chain B: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53, I.59, L.71
20 PLIP interactions:11 interactions with chain A, 9 interactions with chain B,- Hydrophobic interactions: A:L.19, A:I.22, A:I.22, A:F.26, A:F.26, A:F.26, A:Y.45, A:I.49, A:I.49, A:M.52, B:L.19, B:I.22, B:F.26, B:F.26, B:I.49, B:M.52, B:I.59, B:L.71
- Salt bridges: A:K.53, B:K.53
HEM.16: 18 residues within 4Å:- Chain C: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53, A.55, I.59
- Chain D: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53
17 PLIP interactions:10 interactions with chain C, 7 interactions with chain D,- Hydrophobic interactions: C:L.19, C:I.22, C:F.26, C:F.26, C:I.49, C:I.49, C:M.52, C:A.55, C:I.59, D:L.19, D:I.22, D:I.22, D:F.26, D:I.49, D:M.52
- Salt bridges: C:K.53, D:K.53
HEM.24: 19 residues within 4Å:- Chain E: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53, I.59, L.71
- Chain F: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53, L.71
19 PLIP interactions:10 interactions with chain E, 9 interactions with chain F,- Hydrophobic interactions: E:L.19, E:I.22, E:F.26, E:F.26, E:F.26, E:I.49, E:M.52, E:I.59, E:L.71, F:L.19, F:I.22, F:I.22, F:F.26, F:F.26, F:I.49, F:M.52, F:L.71
- Salt bridges: E:K.53, F:K.53
HEM.32: 16 residues within 4Å:- Chain G: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53
- Chain H: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53
17 PLIP interactions:9 interactions with chain G, 8 interactions with chain H,- Hydrophobic interactions: G:L.19, G:I.22, G:F.26, G:F.26, G:F.26, G:I.49, G:I.49, G:M.52, H:L.19, H:I.22, H:I.22, H:F.26, H:I.49, H:I.49, H:M.52
- Salt bridges: G:K.53, H:K.53
HEM.42: 17 residues within 4Å:- Chain I: L.19, I.22, N.23, F.26, Y.45, I.49, M.52
- Chain J: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53, I.59, L.71
20 PLIP interactions:9 interactions with chain J, 11 interactions with chain I,- Hydrophobic interactions: J:L.19, J:I.22, J:F.26, J:F.26, J:I.49, J:M.52, J:I.59, J:L.71, I:L.19, I:I.22, I:I.22, I:F.26, I:F.26, I:F.26, I:Y.45, I:I.49, I:I.49, I:M.52
- Salt bridges: J:K.53, I:K.53
HEM.51: 18 residues within 4Å:- Chain K: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53, A.55, I.59
- Chain L: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53
17 PLIP interactions:10 interactions with chain K, 7 interactions with chain L,- Hydrophobic interactions: K:L.19, K:I.22, K:F.26, K:F.26, K:I.49, K:I.49, K:M.52, K:A.55, K:I.59, L:L.19, L:I.22, L:I.22, L:F.26, L:I.49, L:M.52
- Salt bridges: K:K.53, L:K.53
HEM.59: 19 residues within 4Å:- Chain M: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53, I.59, L.71
- Chain N: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53, L.71
19 PLIP interactions:9 interactions with chain N, 10 interactions with chain M,- Hydrophobic interactions: N:L.19, N:I.22, N:I.22, N:F.26, N:F.26, N:I.49, N:M.52, N:L.71, M:L.19, M:I.22, M:F.26, M:F.26, M:F.26, M:I.49, M:M.52, M:I.59, M:L.71
- Salt bridges: N:K.53, M:K.53
HEM.67: 16 residues within 4Å:- Chain O: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53
- Chain P: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53
17 PLIP interactions:8 interactions with chain P, 9 interactions with chain O,- Hydrophobic interactions: P:L.19, P:I.22, P:I.22, P:F.26, P:I.49, P:I.49, P:M.52, O:L.19, O:I.22, O:F.26, O:F.26, O:F.26, O:I.49, O:I.49, O:M.52
- Salt bridges: P:K.53, O:K.53
HEM.77: 17 residues within 4Å:- Chain Q: L.19, I.22, N.23, F.26, Y.45, I.49, M.52
- Chain R: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53, I.59, L.71
20 PLIP interactions:9 interactions with chain R, 11 interactions with chain Q,- Hydrophobic interactions: R:L.19, R:I.22, R:F.26, R:F.26, R:I.49, R:M.52, R:I.59, R:L.71, Q:L.19, Q:I.22, Q:I.22, Q:F.26, Q:F.26, Q:F.26, Q:Y.45, Q:I.49, Q:I.49, Q:M.52
- Salt bridges: R:K.53, Q:K.53
HEM.86: 18 residues within 4Å:- Chain S: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53, A.55, I.59
- Chain T: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53
17 PLIP interactions:10 interactions with chain S, 7 interactions with chain T,- Hydrophobic interactions: S:L.19, S:I.22, S:F.26, S:F.26, S:I.49, S:I.49, S:M.52, S:A.55, S:I.59, T:L.19, T:I.22, T:I.22, T:F.26, T:I.49, T:M.52
- Salt bridges: S:K.53, T:K.53
HEM.94: 19 residues within 4Å:- Chain U: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53, I.59, L.71
- Chain V: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53, L.71
19 PLIP interactions:10 interactions with chain U, 9 interactions with chain V,- Hydrophobic interactions: U:L.19, U:I.22, U:F.26, U:F.26, U:F.26, U:I.49, U:M.52, U:I.59, U:L.71, V:L.19, V:I.22, V:I.22, V:F.26, V:F.26, V:I.49, V:M.52, V:L.71
- Salt bridges: U:K.53, V:K.53
HEM.102: 16 residues within 4Å:- Chain W: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53
- Chain X: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53
17 PLIP interactions:9 interactions with chain W, 8 interactions with chain X,- Hydrophobic interactions: W:L.19, W:I.22, W:F.26, W:F.26, W:F.26, W:I.49, W:I.49, W:M.52, X:L.19, X:I.22, X:I.22, X:F.26, X:I.49, X:I.49, X:M.52
- Salt bridges: W:K.53, X:K.53
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Swartz, L. et al., Redox-Dependent Structural Changes in the Azotobacter vinelandii Bacterioferritin: New Insights into the Ferroxidase and Iron Transport Mechanism(,). Biochemistry (2006)
- Release Date
- 2006-04-04
- Peptides
- Bacterioferritin: ABCDEFGHIJKLMNOPQRSTUVWX
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
GH
HI
AJ
BK
CL
DM
EN
FO
GP
HQ
AR
BS
CT
DU
EV
FW
GX
H
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.70 Å
- Oligo State
- homo-24-mer
- Ligands
- 54 x FE2: FE (II) ION(Non-covalent)
- 39 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)
- 12 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Swartz, L. et al., Redox-Dependent Structural Changes in the Azotobacter vinelandii Bacterioferritin: New Insights into the Ferroxidase and Iron Transport Mechanism(,). Biochemistry (2006)
- Release Date
- 2006-04-04
- Peptides
- Bacterioferritin: ABCDEFGHIJKLMNOPQRSTUVWX
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
GH
HI
AJ
BK
CL
DM
EN
FO
GP
HQ
AR
BS
CT
DU
EV
FW
GX
H