SMTL ID : 2fol.1

Crystal structure of human RAB1A in complex with GDP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.63 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 2 residues within 4Å: Chain A: S.39 Ligands: GDP.2 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:S.39, H2O.1, H2O.1, H2O.1

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.2: 19 residues within 4Å: Chain A: D.33, S.34, G.35, V.36, G.37, K.38, S.39, C.40, Y.50, T.51, E.52, N.138, K.139, D.141, L.142, S.168, A.169, K.170 Ligands: MG.1 23 PLIP interactions: 23 interactions with chain A Hydrogen bonds: A:G.35, A:V.36, A:G.37, A:K.38, A:S.39, A:S.39, A:C.40, A:Y.50, A:T.51, A:N.138, A:K.139, A:K.139, A:A.169, A:K.170 Water bridges: A:S.39, A:S.39, A:S.39, A:D.80 Salt bridges: A:K.38, A:E.52, A:D.141 pi-Stacking: A:Y.50, A:Y.50

2 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.3: 1 residues within 4Å: Chain A: D.109 No protein-ligand interaction detected (PLIP) UNX.4: 2 residues within 4Å: Chain A: G.59, V.60 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, J. et al., Crystal structure of human RAB1A in complex with GDP. To be Published

Release Date

2006-01-31

Peptides

Ras-related protein Rab-1A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Ras-related protein Rab-1A