SMTL ID : 2for.1

Crystal Structure of the Shigella flexneri Farnesyl Pyrophosphate Synthase Complex with an Isopentenyl Pyrophosphate

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

7 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 6 residues within 4Å: Chain A: G.68, K.69, H.101, R.120 Ligands: PO4.2, IPR.6 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:K.69 Water bridges: A:K.69, A:K.69, A:R.70, A:R.72, A:R.72 Salt bridges: A:K.69, A:H.101, A:R.120 PO4.2: 5 residues within 4Å: Chain A: R.72, H.101, T.206 Ligands: PO4.1, IPR.6 6 PLIP interactions: 6 interactions with chain A Water bridges: A:K.69, A:R.72, A:Q.244 Salt bridges: A:K.69, A:R.72, A:H.101 PO4.3: 5 residues within 4Å: Chain A: D.185, H.202, K.205, Q.244, K.271 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Q.244 Water bridges: A:H.202, A:H.202 Salt bridges: A:H.202, A:K.205, A:K.271 PO4.4: 4 residues within 4Å: Chain A: R.200, R.203, H.204 Ligands: PO4.5 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.203, A:H.204 PO4.5: 3 residues within 4Å: Chain A: R.203, R.211 Ligands: PO4.4 2 PLIP interactions: 2 interactions with chain A Water bridges: A:H.204 Salt bridges: A:R.211 PO4.7: 6 residues within 4Å: Chain B: G.68, K.69, H.101, R.120 Ligands: PO4.8, IPR.9 12 PLIP interactions: 12 interactions with chain B Hydrogen bonds: B:K.69 Water bridges: B:K.69, B:K.69, B:K.69, B:R.70, B:R.70, B:R.70, B:E.98, B:R.120 Salt bridges: B:K.69, B:H.101, B:R.120 PO4.8: 5 residues within 4Å: Chain B: R.72, H.101, L.105 Ligands: PO4.7, IPR.9 9 PLIP interactions: 9 interactions with chain B Water bridges: B:K.69, B:K.69, B:K.69, B:H.101, B:H.101, B:R.119 Salt bridges: B:K.69, B:R.72, B:H.101

2 x IPR: ISOPENTYL PYROPHOSPHATE(Non-covalent)

IPR.6: 8 residues within 4Å: Chain A: K.69, L.71, R.72, H.101, D.247, R.321 Ligands: PO4.1, PO4.2 8 PLIP interactions: 8 interactions with chain A Water bridges: A:K.69, A:R.72, A:R.72 Salt bridges: A:K.69, A:K.69, A:R.72, A:R.72, A:H.101 IPR.9: 8 residues within 4Å: Chain B: K.69, L.71, R.72, H.101, L.105, R.119 Ligands: PO4.7, PO4.8 14 PLIP interactions: 14 interactions with chain B Water bridges: B:K.69, B:K.69, B:K.69, B:K.69, B:L.71, B:R.72, B:H.101, B:H.101 Salt bridges: B:K.69, B:K.69, B:R.72, B:R.72, B:H.101, B:H.101

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Minasov, G. et al., Crystal Structure of the Shigella flexneri Farnesyl Pyrophosphate Synthase Complex with an Isopentenyl Pyrophosphate. To be Published

Release Date

2006-01-31

Peptides

Geranyltranstransferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Geranyltranstransferase