SMTL ID : 2fp7.1

West Nile Virus NS2B/NS3protease in complex with Bz-Nle-Lys-Arg-Arg-H

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.68 Å

Oligo State

hetero-1-1-mer

Ligands

1 x BEZ- NLE- LYS- ARG- OAR: N-benzoyl-L-norleucyl-L-lysyl-N-[(2S)-5-carbamimidamido-1-hydroxypentan-2-yl]-L-argininamide(Non-covalent)

BEZ-NLE-LYS-ARG-OAR.1: 16 residues within 4Å: Chain A: D.39, G.40, N.41, F.42, Q.43 Chain B: H.36, D.60, D.114, Y.115, T.117, S.120, Y.135, G.136, N.137, G.138, Y.146 12 PLIP interactions: 10 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: B:Y.135, B:Y.146 Hydrogen bonds: B:G.136, B:N.137, B:G.138, A:G.40, A:F.42 Water bridges: B:D.60, B:D.60 Salt bridges: B:D.60, B:D.114 pi-Cation interactions: B:Y.146

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Erbel, P. et al., Structural basis for the activation of flaviviral NS3 proteases from dengue and West Nile virus. Nat.Struct.Mol.Biol. (2006)

Release Date

2006-03-07

Peptides

Genome polyprotein: A
Genome polyprotein: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Genome polyprotein

Genome polyprotein