SMTL ID : 2fpd.2 (1 other biounit)

Sad structure determination: crystal structure of the intrinsic dimerization sh3 domain of the ib1 scaffold protein

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

homo-octamer

Ligands

2 x GLC- GLC: alpha-D-glucopyranose-(1-1)-alpha-D-glucopyranose(Non-covalent)

GLC-GLC.1: 4 residues within 4Å: Chain C: G.1, S.2, Y.42, M.44 1 PLIP interactions: 1 interactions with chain C Water bridges: C:G.47 GLC-GLC.4: 4 residues within 4Å: Chain G: G.1, S.2, Y.42, M.44 2 PLIP interactions: 2 interactions with chain G Hydrogen bonds: G:Y.42 Water bridges: G:G.47

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 2 residues within 4Å: Chain A: R.11 Chain C: Y.37 5 PLIP interactions: 5 interactions with chain A Water bridges: A:R.11, A:E.23, A:E.23, A:E.23 Salt bridges: A:R.11 SO4.3: 2 residues within 4Å: Chain B: Y.37 Chain D: R.11 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain D Hydrogen bonds: B:Y.37 Salt bridges: D:R.11 SO4.5: 2 residues within 4Å: Chain E: R.11 Chain G: Y.37 6 PLIP interactions: 1 interactions with chain G, 5 interactions with chain E Hydrogen bonds: G:Y.37 Water bridges: E:R.11, E:E.23, E:E.23, E:E.23 Salt bridges: E:R.11 SO4.6: 2 residues within 4Å: Chain F: Y.37 Chain H: R.11 1 PLIP interactions: 1 interactions with chain H Salt bridges: H:R.11

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kristensen, O. et al., A unique set of SH3-SH3 interactions controls IB1 homodimerization. Embo J. (2006)

Release Date

2006-02-28

Peptides

C-jun-amino-terminal kinase interacting protein 1: ABCDEFGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
A

F
B

G
C

H
D

C-jun-amino-terminal kinase interacting protein 1

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