SMTL ID : 2fq6.1

Cystathionine beta-lyase (cbl) from escherichia coli in complex with n-hydrazinocarbonylmethyl-2-trifluoromethyl-benzamide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.78 Å

Oligo State

homo-tetramer

Ligands

4 x P3F: PHOSPHORIC ACID MONO-(5-HYDROXY-6-METHYL-4-{[2-(2-TRIFLUOROMETHYL-BENZOYLAMINO)-ACETYL]-HYDRAZONOMETHYL}-PYRIDIN-3-YLMETHYL)ESTER(Non-covalent)

P3F.1: 20 residues within 4Å: Chain A: C.105, G.106, A.107, Y.131, P.133, E.174, S.178, D.205, A.227, T.229, K.230, M.239, Y.358, S.359, W.360, R.392 Chain C: F.75, Y.76, R.78, Y.258 20 PLIP interactions: 4 interactions with chain C, 16 interactions with chain A Hydrophobic interactions: C:Y.258, A:P.133, A:A.227 Hydrogen bonds: C:Y.76, A:G.106, A:A.107, A:Y.131, A:Y.131, A:T.207, A:T.229, A:K.230, A:S.359, A:R.392, A:R.392 Salt bridges: C:R.78, A:K.230 pi-Cation interactions: C:R.78 Water bridges: A:S.178, A:W.360 pi-Stacking: A:Y.131 P3F.2: 21 residues within 4Å: Chain B: C.105, G.106, A.107, Y.131, P.133, E.174, S.178, D.205, T.207, A.227, T.229, K.230, M.239, Y.358, S.359, W.360, R.392 Chain D: F.75, Y.76, R.78, Y.258 18 PLIP interactions: 15 interactions with chain B, 3 interactions with chain D Hydrophobic interactions: B:P.133, B:A.227, D:Y.258 Hydrogen bonds: B:G.106, B:A.107, B:Y.131, B:Y.131, B:Y.131, B:K.230, B:S.359, B:R.392, B:R.392 Water bridges: B:Y.358, B:W.360 Salt bridges: B:K.230, D:R.78 pi-Stacking: B:Y.131 Halogen bonds: D:Y.258 P3F.3: 20 residues within 4Å: Chain A: F.75, Y.76, R.78, Y.258 Chain C: C.105, G.106, A.107, Y.131, P.133, E.174, S.178, D.205, A.227, T.229, K.230, M.239, Y.358, S.359, W.360, R.392 18 PLIP interactions: 15 interactions with chain C, 3 interactions with chain A Hydrophobic interactions: C:P.133, C:A.227, A:Y.258 Hydrogen bonds: C:G.106, C:A.107, C:Y.131, C:Y.131, C:Y.131, C:K.230, C:S.359, C:R.392, C:R.392 Water bridges: C:S.178, C:W.360 Salt bridges: C:K.230, A:R.78 pi-Stacking: C:Y.131 pi-Cation interactions: A:R.78 P3F.4: 21 residues within 4Å: Chain B: F.75, Y.76, R.78, Y.258 Chain D: C.105, G.106, A.107, Y.131, P.133, E.174, S.178, D.205, T.207, A.227, T.229, K.230, M.239, Y.358, S.359, W.360, R.392 19 PLIP interactions: 15 interactions with chain D, 4 interactions with chain B Hydrophobic interactions: D:P.133, D:A.227, B:Y.258 Hydrogen bonds: D:G.106, D:A.107, D:Y.131, D:Y.131, D:T.207, D:T.229, D:K.230, D:S.359, D:R.392, D:R.392, B:Y.76 Water bridges: D:W.360 Salt bridges: D:K.230, B:R.78 pi-Stacking: D:Y.131 Halogen bonds: B:Y.258

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ejim, L.J. et al., Inhibitors of bacterial cystathionine beta-lyase: leads for new antimicrobial agents and probes of enzyme structure and function. J.Med.Chem. (2007)

Release Date

2006-12-26

Peptides

Cystathionine beta-lyase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Cystathionine beta-lyase

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