SMTL ID : 2fqp.3 (2 other biounits)

Crystal structure of a cupin domain (bp2299) from bordetella pertussis tohama i at 1.80 A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-tetramer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 3 residues within 4Å: Chain A: H.34, H.36, H.77 6 PLIP interactions: 3 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:H.34, A:H.36, A:H.77, H2O.3, H2O.3, H2O.3 ZN.4: 4 residues within 4Å: Chain B: H.34, H.36, H.77 Ligands: ACT.5 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:H.34, B:H.36, B:H.77 ZN.6: 3 residues within 4Å: Chain C: H.34, H.36, H.77 5 PLIP interactions: 3 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:H.34, C:H.36, C:H.77, H2O.8, H2O.8 ZN.8: 3 residues within 4Å: Chain D: H.34, H.36, H.77 6 PLIP interactions: 3 interactions with chain D, 3 Ligand-Water interactions Metal complexes: D:H.34, D:H.36, D:H.77, H2O.11, H2O.11, H2O.11

4 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 4 residues within 4Å: Chain A: Y.40, Y.69, H.77, F.89 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:F.89 Hydrogen bonds: A:Y.40 Water bridges: A:Y.40 Salt bridges: A:R.71, A:H.77 ACT.5: 7 residues within 4Å: Chain B: Y.40, V.42, Y.69, R.71, H.77, F.89 Ligands: ZN.4 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:F.89 Hydrogen bonds: B:Y.40 Salt bridges: B:R.71, B:H.77 ACT.7: 4 residues within 4Å: Chain C: Y.40, Y.69, H.77, F.89 4 PLIP interactions: 4 interactions with chain C Hydrophobic interactions: C:F.89 Hydrogen bonds: C:Y.40 Water bridges: C:Y.40 Salt bridges: C:H.77 ACT.9: 5 residues within 4Å: Chain D: Y.40, Y.69, R.71, H.77, F.89 5 PLIP interactions: 5 interactions with chain D Hydrophobic interactions: D:F.89 Hydrogen bonds: D:Y.40 Water bridges: D:Y.40 Salt bridges: D:R.71, D:H.77

1 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)

1PE.3: 7 residues within 4Å: Chain A: D.14, N.15, E.16, K.95 Chain D: Y.69, T.70, R.71 2 PLIP interactions: 2 interactions with chain D Water bridges: D:R.71, D:R.71

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of (np_880937.1) from BORDETELLA PERTUSSIS at 1.80 A resolution. To be published

Release Date

2006-05-16

Peptides

hypothetical protein BP2299: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

C
A

D
B

hypothetical protein BP2299

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