SMTL ID : 2fsv.1

Structure of transhydrogenase (dI.D135N.NAD+)2(dIII.E155W.NADP+)1 asymmetric complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

hetero-2-1-mer

Ligands

1 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.1: 20 residues within 4Å: Chain A: R.127, Q.132, N.135, S.138, G.179, V.180, G.181, V.182, D.202, V.203, R.204, G.234, A.236, Q.247, T.264, A.265, L.266, I.267, P.273, L.275 21 PLIP interactions: 21 interactions with chain A Hydrophobic interactions: A:R.127 Hydrogen bonds: A:R.127, A:R.127, A:N.135, A:V.180, A:V.180, A:V.182, A:V.203, A:R.204, A:R.204, A:L.266, A:L.266 Water bridges: A:L.137, A:S.141, A:V.180, A:Q.210, A:M.239, A:Q.247, A:Q.247 Salt bridges: A:R.127 pi-Cation interactions: A:R.127

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 5 residues within 4Å: Chain A: Q.75, R.76, H.99, G.101, N.105 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:Q.75, A:R.76, A:R.76, A:N.105 Water bridges: A:H.99, A:T.104, A:T.104 GOL.3: 5 residues within 4Å: Chain B: R.15, Q.75, H.99, E.296, N.322 10 PLIP interactions: 10 interactions with chain B Hydrogen bonds: B:R.15, B:Q.75, B:H.99, B:E.296, B:N.322, B:N.322 Water bridges: B:R.15, B:R.15, B:R.15, B:N.322 GOL.4: 6 residues within 4Å: Chain B: Q.75, R.76, H.99, L.100, G.101, N.105 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:R.76, B:R.76, B:H.99, B:N.105

1 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.5: 27 residues within 4Å: Chain B: Q.132 Chain C: G.54, Y.55, G.56, V.59, A.60, V.87, A.88, G.89, R.90, M.91, P.92, G.129, A.130, N.131, D.132, V.133, K.164, R.165, S.166, A.168, S.169, G.170, Y.171, G.189, D.190, A.191 24 PLIP interactions: 2 interactions with chain B, 22 interactions with chain C Hydrogen bonds: B:Q.132, B:Q.132, C:Y.55, C:G.56, C:G.89, C:M.91, C:N.131, C:N.131, C:D.132, C:D.132, C:D.132, C:V.133, C:R.165, C:S.166, C:A.168, C:Y.171, C:D.190, C:A.191 Water bridges: C:S.166, C:S.169 Salt bridges: C:R.90, C:K.164, C:R.165 pi-Cation interactions: C:R.165

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Brondijk, T.H. et al., The Role of Invariant Amino Acid Residues at the Hydride Transfer Site of Proton-translocating Transhydrogenase. J.Biol.Chem. (2006)

Release Date

2006-02-28

Peptides

NAD(P) transhydrogenase subunit alpha part 1: AB
NAD(P) transhydrogenase subunit beta: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

NAD(P) transhydrogenase subunit alpha part 1

NAD(P) transhydrogenase subunit beta