SMTL ID : 2ftp.2 (1 other biounit)

Crystal Structure of hydroxymethylglutaryl-CoA lyase from Pseudomonas aeruginosa

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-hexamer

Ligands

6 x NA: SODIUM ION(Non-functional Binders)

NA.1: 4 residues within 4Å: Chain A: D.18, H.209, H.211, N.251 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.209 Water bridges: A:R.17 NA.4: 4 residues within 4Å: Chain B: D.18, H.209, H.211, N.251 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:H.211 Water bridges: B:R.17 NA.7: 4 residues within 4Å: Chain C: D.18, H.209, H.211, N.251 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:H.209 Water bridges: C:R.17 NA.10: 4 residues within 4Å: Chain D: D.18, H.209, H.211, N.251 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:N.251 Water bridges: D:R.17 NA.13: 4 residues within 4Å: Chain E: D.18, H.209, H.211, N.251 2 PLIP interactions: 2 interactions with chain E Hydrogen bonds: E:N.251 Water bridges: E:R.17 NA.16: 4 residues within 4Å: Chain F: D.18, H.209, H.211, N.251 2 PLIP interactions: 2 interactions with chain F Hydrogen bonds: F:D.18 Water bridges: F:R.17

12 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 10 residues within 4Å: Chain A: S.51, F.52, V.53, P.55, M.61, A.62, G.63, S.64, A.65 Chain D: N.116 8 PLIP interactions: 5 interactions with chain A, 3 interactions with chain D Hydrogen bonds: A:V.53, A:G.63, A:S.64, A:A.65, A:E.66, D:N.116, D:N.116 Water bridges: D:R.113 GOL.3: 8 residues within 4Å: Chain A: F.103, A.104, A.105, F.110, N.114, I.115, S.145 Chain D: K.56 6 PLIP interactions: 5 interactions with chain A, 1 interactions with chain D Hydrogen bonds: A:A.104, A:S.111, A:N.114, A:S.145, D:K.56 Water bridges: A:A.105 GOL.5: 10 residues within 4Å: Chain B: S.51, F.52, V.53, P.55, M.61, A.62, G.63, S.64, A.65 Chain F: N.116 8 PLIP interactions: 5 interactions with chain B, 3 interactions with chain F Hydrogen bonds: B:V.53, B:G.63, B:S.64, B:A.65, B:E.66, F:N.116, F:N.116 Water bridges: F:R.113 GOL.6: 8 residues within 4Å: Chain B: F.103, A.104, A.105, F.110, N.114, I.115, S.145 Chain F: K.56 6 PLIP interactions: 1 interactions with chain F, 5 interactions with chain B Hydrogen bonds: F:K.56, B:A.104, B:S.111, B:N.114, B:S.145 Water bridges: B:A.105 GOL.8: 10 residues within 4Å: Chain C: S.51, F.52, V.53, P.55, M.61, A.62, G.63, S.64, A.65 Chain E: N.116 8 PLIP interactions: 5 interactions with chain C, 3 interactions with chain E Hydrogen bonds: C:V.53, C:G.63, C:S.64, C:A.65, C:E.66, E:N.116, E:N.116 Water bridges: E:R.113 GOL.9: 8 residues within 4Å: Chain C: F.103, A.104, A.105, F.110, N.114, I.115, S.145 Chain E: K.56 6 PLIP interactions: 5 interactions with chain C, 1 interactions with chain E Hydrogen bonds: C:A.104, C:S.111, C:N.114, C:S.145, E:K.56 Water bridges: C:A.105 GOL.11: 10 residues within 4Å: Chain A: N.116 Chain D: S.51, F.52, V.53, P.55, M.61, A.62, G.63, S.64, A.65 8 PLIP interactions: 5 interactions with chain D, 3 interactions with chain A Hydrogen bonds: D:V.53, D:G.63, D:S.64, D:A.65, D:E.66, A:N.116, A:N.116 Water bridges: A:R.113 GOL.12: 8 residues within 4Å: Chain A: K.56 Chain D: F.103, A.104, A.105, F.110, N.114, I.115, S.145 6 PLIP interactions: 5 interactions with chain D, 1 interactions with chain A Hydrogen bonds: D:A.104, D:S.111, D:N.114, D:S.145, A:K.56 Water bridges: D:A.105 GOL.14: 10 residues within 4Å: Chain C: N.116 Chain E: S.51, F.52, V.53, P.55, M.61, A.62, G.63, S.64, A.65 8 PLIP interactions: 5 interactions with chain E, 3 interactions with chain C Hydrogen bonds: E:V.53, E:G.63, E:S.64, E:A.65, E:E.66, C:N.116, C:N.116 Water bridges: C:R.113 GOL.15: 8 residues within 4Å: Chain C: K.56 Chain E: F.103, A.104, A.105, F.110, N.114, I.115, S.145 6 PLIP interactions: 5 interactions with chain E, 1 interactions with chain C Hydrogen bonds: E:A.104, E:S.111, E:N.114, E:S.145, C:K.56 Water bridges: E:A.105 GOL.17: 10 residues within 4Å: Chain B: N.116 Chain F: S.51, F.52, V.53, P.55, M.61, A.62, G.63, S.64, A.65 8 PLIP interactions: 5 interactions with chain F, 3 interactions with chain B Hydrogen bonds: F:V.53, F:G.63, F:S.64, F:A.65, F:E.66, B:N.116, B:N.116 Water bridges: B:R.113 GOL.18: 8 residues within 4Å: Chain B: K.56 Chain F: F.103, A.104, A.105, F.110, N.114, I.115, S.145 6 PLIP interactions: 5 interactions with chain F, 1 interactions with chain B Hydrogen bonds: F:A.104, F:S.111, F:N.114, F:S.145, B:K.56 Water bridges: F:A.105

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xiao, T. et al., Crystal Structure of hydroxymethylglutaryl-CoA lyase from Pseudomonas aeruginosa. To be Published

Release Date

2006-03-14

Peptides

hydroxymethylglutaryl-CoA lyase: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

hydroxymethylglutaryl-CoA lyase

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