SMTL ID : 2fub.1

Crystal structure of urate oxidase at 140 MPa

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-tetramer

Ligands

4 x AZA: 8-AZAXANTHINE(Non-covalent)

AZA.1: 12 residues within 4Å: Chain A: F.159, L.170, R.176, S.226, V.227, Q.228, N.254 Chain B: Y.8, I.54, A.56, T.57, D.58 12 PLIP interactions: 8 interactions with chain A, 4 interactions with chain B Hydrogen bonds: A:R.176, A:R.176, A:V.227, A:Q.228, A:Q.228, A:N.254, B:T.57, B:D.58 pi-Stacking: A:F.159, A:F.159 Water bridges: B:T.57, B:T.57 AZA.3: 12 residues within 4Å: Chain A: Y.8, I.54, A.56, T.57, D.58 Chain B: F.159, L.170, R.176, S.226, V.227, Q.228, N.254 12 PLIP interactions: 8 interactions with chain B, 4 interactions with chain A Hydrogen bonds: B:R.176, B:R.176, B:V.227, B:Q.228, B:Q.228, B:N.254, A:T.57, A:D.58 pi-Stacking: B:F.159, B:F.159 Water bridges: A:T.57, A:T.57 AZA.5: 12 residues within 4Å: Chain C: F.159, L.170, R.176, S.226, V.227, Q.228, N.254 Chain D: Y.8, I.54, A.56, T.57, D.58 10 PLIP interactions: 2 interactions with chain D, 8 interactions with chain C Hydrogen bonds: D:T.57, D:D.58, C:R.176, C:R.176, C:V.227, C:Q.228, C:Q.228, C:N.254 pi-Stacking: C:F.159, C:F.159 AZA.7: 12 residues within 4Å: Chain C: Y.8, I.54, A.56, T.57, D.58 Chain D: F.159, L.170, R.176, S.226, V.227, Q.228, N.254 10 PLIP interactions: 8 interactions with chain D, 2 interactions with chain C Hydrogen bonds: D:R.176, D:R.176, D:V.227, D:Q.228, D:Q.228, D:N.254, C:T.57, C:D.58 pi-Stacking: D:F.159, D:F.159

4 x CYS: CYSTEINE(Non-covalent)

CYS.2: 2 residues within 4Å: Chain A: D.11, C.35 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.11 CYS.4: 2 residues within 4Å: Chain B: D.11, C.35 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:D.11 CYS.6: 2 residues within 4Å: Chain C: D.11, C.35 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:D.11 CYS.8: 2 residues within 4Å: Chain D: D.11, C.35 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:D.11

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Colloc'h, N. et al., High pressure macromolecular crystallography: The 140-MPa crystal structure at 2.3 A resolution of urate oxidase, a 135-kDa tetrameric assembly. Biochim.Biophys.Acta (2006)

Release Date

2006-02-14

Peptides

Uricase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

Uricase

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