SMTL ID : 2fuf.1

Crystal structure of the SV40 large T antigen origin-binding domain

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.45 Å

Oligo State

homo-hexamer

Ligands

6 x FLC: CITRATE ANION(Non-covalent)

FLC.1: 4 residues within 4Å: Chain A: T.36, K.37, N.63, H.64 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:K.37, A:K.37 Water bridges: A:E.38, A:E.38, A:N.63, A:N.63, A:N.63 Salt bridges: A:K.37, A:H.64 FLC.2: 4 residues within 4Å: Chain B: T.36, K.37, N.63, H.64 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:K.37, B:K.37 Water bridges: B:E.38, B:E.38, B:N.63, B:N.63, B:N.63 Salt bridges: B:K.37, B:H.64 FLC.3: 4 residues within 4Å: Chain C: T.36, K.37, N.63, H.64 9 PLIP interactions: 9 interactions with chain C Hydrogen bonds: C:K.37, C:K.37 Water bridges: C:E.38, C:E.38, C:N.63, C:N.63, C:N.63 Salt bridges: C:K.37, C:H.64 FLC.4: 4 residues within 4Å: Chain D: T.36, K.37, N.63, H.64 9 PLIP interactions: 9 interactions with chain D Hydrogen bonds: D:K.37, D:K.37 Water bridges: D:E.38, D:E.38, D:N.63, D:N.63, D:N.63 Salt bridges: D:K.37, D:H.64 FLC.5: 4 residues within 4Å: Chain E: T.36, K.37, N.63, H.64 9 PLIP interactions: 9 interactions with chain E Hydrogen bonds: E:K.37, E:K.37 Water bridges: E:E.38, E:E.38, E:N.63, E:N.63, E:N.63 Salt bridges: E:K.37, E:H.64 FLC.6: 4 residues within 4Å: Chain F: T.36, K.37, N.63, H.64 9 PLIP interactions: 9 interactions with chain F Hydrogen bonds: F:K.37, F:K.37 Water bridges: F:E.38, F:E.38, F:N.63, F:N.63, F:N.63 Salt bridges: F:K.37, F:H.64

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Meinke, G. et al., Crystal structure of the simian virus 40 large T-antigen origin-binding domain. J.Virol. (2006)

Release Date

2006-08-22

Peptides

Large T antigen: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

Large T antigen

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