SMTL ID : 2fuz.1

UGL hexagonal crystal structure without glycine and DTT molecules

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

9 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.1: 7 residues within 4Å: Chain A: H.26, V.27, D.29, V.35, Y.338, I.344, S.345 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:V.35 Hydrogen bonds: A:H.26 MPD.2: 3 residues within 4Å: Chain A: T.40, D.41, N.83 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.83, A:N.83 Water bridges: A:T.40 MPD.3: 5 residues within 4Å: Chain A: W.134, E.141, R.145, I.147, H.210 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:W.134, A:W.134, A:W.134, A:I.147 MPD.4: 4 residues within 4Å: Chain A: R.251, E.302, R.305, F.306 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:E.302, A:F.306 Hydrogen bonds: A:E.302, A:E.302 MPD.5: 1 residues within 4Å: Chain A: G.327 No protein-ligand interaction detected (PLIP) MPD.6: 4 residues within 4Å: Chain A: Y.55, G.59, V.103 Ligands: MPD.9 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:V.103 MPD.7: 4 residues within 4Å: Chain A: L.290, S.294, R.303, R.363 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:L.290 Hydrogen bonds: A:R.303 MPD.8: 6 residues within 4Å: Chain A: L.10, G.11, A.14, T.58, D.60, Y.63 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:L.10, A:A.14, A:T.58, A:D.60, A:Y.63 MPD.9: 4 residues within 4Å: Chain A: E.56, V.103, R.375 Ligands: MPD.6 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:V.103, A:R.375

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Itoh, T. et al., Substrate recognition by unsaturated glucuronyl hydrolase from Bacillus sp. GL1. Biochem.Biophys.Res.Commun. (2006)

Release Date

2006-05-30

Peptides

Unsaturated glucuronyl hydrolase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Unsaturated glucuronyl hydrolase

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