SMTL ID : 2fwe.1

crystal structure of the C-terminal domain of the electron transfer catalyst DsbD (oxidized form)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

monomer

Ligands

7 x IOD: IODIDE ION(Non-functional Binders)

IOD.1: 3 residues within 4Å: Chain A: H.10, L.11, F.54 Ligand excluded by PLIP IOD.2: 4 residues within 4Å: Chain A: F.98, D.99, H.105 Ligands: NA.9 Ligand excluded by PLIP IOD.3: 2 residues within 4Å: Chain A: G.100, Q.127 Ligand excluded by PLIP IOD.4: 3 residues within 4Å: Chain A: T.18, V.19, D.20 Ligand excluded by PLIP IOD.5: 3 residues within 4Å: Chain A: K.47, E.48, K.51 Ligand excluded by PLIP IOD.6: 3 residues within 4Å: Chain A: W.42, C.43, L.92 Ligand excluded by PLIP IOD.7: 2 residues within 4Å: Chain A: L.90, G.91 Ligand excluded by PLIP

1 x NI: NICKEL (II) ION(Non-covalent)

NI.8: 3 residues within 4Å: Chain A: D.65, H.129, H.130 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.65, A:H.129, A:H.130

1 x NA: SODIUM ION(Non-functional Binders)

NA.9: 4 residues within 4Å: Chain A: H.105, R.126, Q.127 Ligands: IOD.2 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.127 Water bridges: A:D.125

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Stirnimann, C.U. et al., High-resolution structures of Escherichia coli cDsbD in different redox states: A combined crystallographic, biochemical and computational study. J.Mol.Biol. (2006)

Release Date

2006-06-13

Peptides

Thiol:disulfide interchange protein dsbD: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Thiol:disulfide interchange protein dsbD

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