SMTL ID : 2fwf.1

high resolution crystal structure of the C-terminal domain of the electron transfer catalyst DsbD (reduced form)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.30 Å

Oligo State

monomer

Ligands

7 x IOD: IODIDE ION(Non-functional Binders)

IOD.1: 2 residues within 4Å: Chain A: E.50, Q.70 Ligand excluded by PLIP IOD.2: 4 residues within 4Å: Chain A: F.98, D.99, H.105 Ligands: NA.8 Ligand excluded by PLIP IOD.3: 2 residues within 4Å: Chain A: G.100, Q.127 Ligand excluded by PLIP IOD.4: 3 residues within 4Å: Chain A: T.18, V.19, D.20 Ligand excluded by PLIP IOD.5: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP IOD.6: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP IOD.7: 1 residues within 4Å: Chain A: E.117 Ligand excluded by PLIP

2 x NA: SODIUM ION(Non-functional Binders)

NA.8: 4 residues within 4Å: Chain A: H.105, R.126, Q.127 Ligands: IOD.2 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.127 NA.9: 2 residues within 4Å: Chain A: N.23, Q.24 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.24 Water bridges: A:Q.24

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Stirnimann, C.U. et al., High-resolution structures of Escherichia coli cDsbD in different redox states: A combined crystallographic, biochemical and computational study. J.Mol.Biol. (2006)

Release Date

2006-06-13

Peptides

Thiol:disulfide interchange protein dsbD: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Thiol:disulfide interchange protein dsbD

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