SMTL ID : 2fxe.1

X-ray crystal structure of HIV-1 protease CRM mutant complexed with atazanavir (BMS-232632)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 1 residues within 4Å: Chain A: P.1 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:P.1 SO4.5: 2 residues within 4Å: Chain B: P.1, H.69 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:P.1 Water bridges: B:H.69, A:F.99 Salt bridges: B:H.69 SO4.6: 1 residues within 4Å: Chain B: R.8 5 PLIP interactions: 5 interactions with chain B Water bridges: B:R.8, B:R.8, B:R.8, B:R.8 Salt bridges: B:R.8

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 4 residues within 4Å: Chain A: K.14, I.15, G.16, G.17 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.17 Water bridges: A:G.16 Salt bridges: A:K.14

1 x DR7: (3S,8S,9S,12S)-3,12-BIS(1,1-DIMETHYLETHYL)-8-HYDROXY-4,11-DIOXO-9-(PHENYLMETHYL)-6-[[4-(2-PYRIDINYL)PHENYL]METHYL]-2,5, 6,10,13-PENTAAZATETRADECANEDIOIC ACID DIMETHYL ESTER(Non-covalent)

DR7.3: 23 residues within 4Å: Chain A: R.8, D.25, G.27, A.28, D.29, G.48, G.49, I.50, P.81, V.82, I.84 Chain B: R.8, D.25, G.27, A.28, D.29, D.30, G.48, G.49, I.50, P.81, V.82, I.84 22 PLIP interactions: 11 interactions with chain A, 11 interactions with chain B Hydrophobic interactions: A:P.81, A:P.81, A:V.82, A:V.82, A:I.84, B:I.50, B:P.81, B:P.81, B:V.82, B:I.84 Hydrogen bonds: A:G.27, A:D.29, A:G.48, B:D.25, B:G.27, B:D.29, B:G.48 Water bridges: A:R.8, A:I.50, B:I.50 Salt bridges: A:D.25, B:D.25

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 3 residues within 4Å: Chain A: K.7, R.8 Chain B: R.87 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:R.87, B:R.87, A:R.8 Water bridges: A:W.6 GOL.7: 3 residues within 4Å: Chain B: V.11, T.12, A.67 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:T.12, B:T.12, B:T.12 Water bridges: B:A.67

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Klei, H.E. et al., X-ray crystal structures of human immunodeficiency virus type 1 protease mutants complexed with atazanavir. J.Virol. (2007)

Release Date

2007-02-20

Peptides

pol protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

pol protein