SMTL ID : 2fxs.1

Yeast HSP82 in complex with the novel HSP90 Inhibitor Radamide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x RDA: METHYL 3-CHLORO-2-{3-[(2,5-DIHYDROXY-4-METHOXYPHENYL)AMINO]-3-OXOPROPYL}-4,6-DIHYDROXYBENZOATE(Non-covalent)

RDA.1: 13 residues within 4Å: Chain A: N.57, A.61, K.64, D.99, I.102, G.103, M.104, N.111, N.112, K.118, F.144, T.191, L.193 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:N.112, A:L.193 Hydrogen bonds: A:N.57, A:K.64, A:G.103, A:N.112, A:N.112, A:K.118, A:T.191 Water bridges: A:A.58, A:K.64, A:K.64, A:K.64, A:K.64, A:D.99, A:G.101, A:N.111, A:N.111

5 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 5 residues within 4Å: Chain A: K.93, D.152, L.197, K.198, D.199 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.197 Water bridges: A:D.199 GOL.3: 4 residues within 4Å: Chain A: K.74, Q.75, T.78, N.161 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.75, A:Q.75 Water bridges: A:N.161 GOL.4: 5 residues within 4Å: Chain A: S.45, K.47, E.203, Y.204, R.209 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:S.45, A:K.47, A:Y.204 Water bridges: A:S.45, A:E.48, A:Q.201, A:E.203, A:R.209 GOL.5: 6 residues within 4Å: Chain A: R.153, E.169, N.171, S.175, F.176, T.177 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.153, A:S.175, A:T.177 Water bridges: A:E.169, A:G.173, A:T.177 GOL.6: 4 residues within 4Å: Chain A: K.89, Q.92, N.184, R.194 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:K.89, A:K.89, A:Q.92 Water bridges: A:Q.155, A:N.184, A:R.194

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Immormino, R.M. et al., Different poses for ligand and chaperone in inhibitor-bound Hsp90 and GRP94: implications for paralog-specific drug design. J.Mol.Biol. (2009)

Release Date

2007-02-06

Peptides

ATP-dependent molecular chaperone HSP82: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

ATP-dependent molecular chaperone HSP82

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