SMTL ID : 2fyf.1

Structure of a putative phosphoserine aminotransferase from Mycobacterium Tuberculosis

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

homo-dimer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: H.71, R.72 Chain B: F.130, Y.363, R.364 6 PLIP interactions: 5 interactions with chain A, 1 interactions with chain B Water bridges: A:Y.272, A:T.274, A:T.274 Salt bridges: A:H.71, A:R.72, B:R.364 SO4.8: 5 residues within 4Å: Chain A: F.130, Y.363, R.364 Chain B: H.71, R.72 6 PLIP interactions: 2 interactions with chain A, 4 interactions with chain B Water bridges: A:G.47, B:T.274, B:T.274 Salt bridges: A:R.364, B:H.71, B:R.72

6 x PC4: TETRACHLOROPLATINATE(II)(Non-covalent)

PC4.2: 1 residues within 4Å: Chain A: W.289 No protein-ligand interaction detected (PLIP) PC4.4: 4 residues within 4Å: Chain A: H.30, L.31, I.351, A.354 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.30 PC4.9: 1 residues within 4Å: Chain B: E.54 No protein-ligand interaction detected (PLIP) PC4.10: 1 residues within 4Å: Chain B: E.129 No protein-ligand interaction detected (PLIP) PC4.12: 6 residues within 4Å: Chain B: R.52, E.54, Q.55, E.285, D.288, W.289 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:E.285 PC4.13: 4 residues within 4Å: Chain B: H.30, L.31, I.351, A.354 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:H.30

2 x PLP: PYRIDOXAL-5'-PHOSPHATE(Non-covalent)

PLP.3: 14 residues within 4Å: Chain A: G.105, A.106, T.107, W.110, F.130, N.174, T.176, D.198, T.200, A.219, Q.221, K.222 Chain B: N.273, T.274 13 PLIP interactions: 10 interactions with chain A, 3 interactions with chain B Hydrophobic interactions: A:F.130, A:T.200 Hydrogen bonds: A:A.106, A:T.107, A:T.107, A:T.176, A:Q.221, A:Q.221, A:K.222, B:N.273, B:T.274, B:T.274 pi-Stacking: A:F.130 PLP.11: 14 residues within 4Å: Chain A: N.273, T.274 Chain B: G.105, A.106, T.107, W.110, F.130, N.174, T.176, D.198, T.200, A.219, Q.221, K.222 15 PLIP interactions: 3 interactions with chain A, 12 interactions with chain B Hydrogen bonds: A:N.273, A:T.274, A:T.274, B:A.106, B:T.107, B:T.107, B:T.176, B:Q.221, B:Q.221, B:K.222 Hydrophobic interactions: B:F.130, B:T.200 Water bridges: B:T.107, B:T.107 pi-Stacking: B:F.130

7 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 6 residues within 4Å: Chain A: R.84, S.85, A.88, Y.97, E.98, V.99 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.98, A:V.99 Water bridges: A:R.84, A:R.84, A:S.85 GOL.6: 2 residues within 4Å: Chain A: W.393, R.397 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.397 GOL.7: 3 residues within 4Å: Chain A: R.353 Chain B: A.74, P.75 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain A Water bridges: B:Q.73, B:A.74, B:N.78 Hydrogen bonds: A:R.353 GOL.14: 6 residues within 4Å: Chain B: R.84, S.85, A.88, Y.97, E.98, V.99 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:E.98, B:V.99 Water bridges: B:R.84, B:R.84, B:R.84, B:S.85 GOL.15: 3 residues within 4Å: Chain A: A.74, P.75 Chain B: R.353 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:R.353 GOL.16: 1 residues within 4Å: Chain B: R.397 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:R.397 GOL.17: 6 residues within 4Å: Chain B: K.38, P.39, R.40, G.42, N.355, G.356 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:K.38, B:K.38, B:R.40 Water bridges: B:G.42

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Coulibaly, F. et al., Structure of phosphoserine aminotransferase from Mycobacterium tuberculosis. Acta Crystallogr.,Sect.D (2012)

Release Date

2007-01-16

Peptides

phosphoserine aminotransferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

phosphoserine aminotransferase

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