SMTL ID : 2fyx.1

Crystal structure of a putative transposase (dr_0177) from deinococcus radiodurans r1 at 1.90 A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

8 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 4 residues within 4Å: Chain A: T.55, G.58, L.59 Ligands: GOL.4 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.58, A:L.59 GOL.2: 6 residues within 4Å: Chain A: T.31, K.32, Y.33, N.116, P.117, H.140 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Y.33, A:N.116, A:H.140 Water bridges: A:R.34, A:R.34 GOL.3: 5 residues within 4Å: Chain A: K.88, K.91, G.92, P.117, Y.119 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.91, A:G.92, A:P.117 Water bridges: A:P.117 GOL.4: 10 residues within 4Å: Chain A: K.14, Y.21, G.58, L.59, E.60, G.76, A.77, T.78, H.81 Ligands: GOL.1 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.14, A:G.58 Water bridges: A:E.60, A:A.77, A:A.77 GOL.5: 8 residues within 4Å: Chain B: T.31, K.32, Y.33, R.34, N.116, Q.139, H.140, A.141 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:Y.33, B:R.34, B:N.116, B:H.140 Water bridges: B:Y.33 GOL.6: 4 residues within 4Å: Chain B: T.55, G.58, L.59 Ligands: GOL.7 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:T.55, B:G.58 GOL.7: 10 residues within 4Å: Chain B: K.14, Y.21, G.58, L.59, E.60, G.76, A.77, T.78, H.81 Ligands: GOL.6 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:Y.21, B:Y.21, B:G.58, B:E.60, B:E.60 Water bridges: B:A.77 GOL.8: 5 residues within 4Å: Chain B: K.88, K.91, G.92, P.117, Y.119 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:K.91, B:G.92, B:P.117 Water bridges: B:P.84

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of a putative Transposase(6457846) from DEINOCOCCUS RADIODURANS at 1.90 A resolution. To be published

Release Date

2006-02-21

Peptides

transposase, putative: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

transposase, putative